{ "type": "genome", "identifier": "GCF_000422685.1", "organism": "Flavobacterium gelidilacus DSM 15343", "title": "Flavobacterium gelidilacus DSM 15343", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000422685.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441177", "wgs_master": "AUGN00000000.1", "refseq_category": "reference genome", "taxid": "1121891", "species_taxid": "206041", "organism_name": "Flavobacterium gelidilacus DSM 15343", "infraspecific_name": "strain=DSM 15343", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/11", "asm_name": "ASM42268v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000422685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/422/685/GCF_000422685.1_ASM42268v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3441043", "genome_size_ungapped": "3439598", "gc_percent": "30.000000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "51", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000422685.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "3159", "protein_coding_gene_count": "3094", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-11", "dateModified": "2013-07-11", "datePublished": "2013-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium gelidilacus DSM 15343" ], "sample_taxid": [ "1121891" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "0.941 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3441043", "Number of Sequences": "47", "Longest Sequences (bp)": "593161", "N50 (bp)": "418451", "Gap Ratio (%)": "0.041993", "GCcontent (%)": "30.0", "Number of CDSs": "3079", "Average Protein Length": "331.7", "Coding Ratio (%)": "89.0", "Number of rRNAs": "5", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium gelidilacus", "strain": "strain=DSM 15343", "accession": "GCA_000422685.1", "taxid": 206041, "species_taxid": 206041, 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78.5384, "matched_fragments": 398, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cheniae", "strain": "strain=DSM 22462", "accession": "GCA_004363695.1", "taxid": 295428, "species_taxid": 295428, "relation_to_type": "type", "validated": true, "ani": 78.5001, "matched_fragments": 398, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sasangense", "strain": "strain=DSM 21067", "accession": "GCA_000686885.1", "taxid": 503361, "species_taxid": 503361, "relation_to_type": "type", "validated": true, "ani": 78.4188, "matched_fragments": 382, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cyclinae", "strain": "strain=KSM-R2A25", "accession": "GCA_021172145.1", "taxid": 2895947, "species_taxid": 2895947, "relation_to_type": "type", "validated": true, "ani": 78.3901, "matched_fragments": 409, 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95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tibetense", "strain": "strain=YH5", "accession": "GCA_003293845.1", "taxid": 2233533, "species_taxid": 2233533, "relation_to_type": "type", "validated": true, "ani": 78.3481, "matched_fragments": 331, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium terrigena", "strain": "strain=DSM 17934", "accession": "GCA_900108955.1", "taxid": 402734, "species_taxid": 402734, "relation_to_type": "type", "validated": true, "ani": 78.2653, "matched_fragments": 335, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium proteolyticum", "strain": "strain=1Y8A", "accession": "GCA_015223105.1", "taxid": 2911683, "species_taxid": 2911683, "relation_to_type": "type", "validated": true, "ani": 78.2637, "matched_fragments": 404, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cucumis", "strain": "strain=DSM 18830", "accession": "GCA_900148835.1", "taxid": 416016, "species_taxid": 416016, "relation_to_type": "type", "validated": true, "ani": 78.0294, "matched_fragments": 338, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium profundi", "strain": "strain=TP390", "accession": "GCA_009753805.1", "taxid": 1774945, "species_taxid": 1774945, "relation_to_type": "type", "validated": true, "ani": 77.9305, "matched_fragments": 396, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium profundi", "strain": "strain=TP390", "accession": "GCA_006491645.1", "taxid": 1774945, "species_taxid": 1774945, "relation_to_type": "type", "validated": true, "ani": 77.9194, "matched_fragments": 398, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium chungbukense", "strain": 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