{
    "type": "genome",
    "identifier": "GCF_000422765.1",
    "organism": "Neptunomonas japonica DSM 18939",
    "title": "Neptunomonas japonica DSM 18939",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000422765.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02440650",
        "wgs_master": "AUGR00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1122599",
        "species_taxid": "417574",
        "organism_name": "Neptunomonas japonica DSM 18939",
        "infraspecific_name": "strain=DSM 18939",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/11",
        "asm_name": "ASM42276v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000422765.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/422/765/GCF_000422765.1_ASM42276v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4391552",
        "genome_size_ungapped": "4390732",
        "gc_percent": "43.500000",
        "replicon_count": "0",
        "scaffold_count": "39",
        "contig_count": "42",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000422765.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "4229",
        "protein_coding_gene_count": "4142",
        "non_coding_gene_count": "65",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-11",
    "dateModified": "2013-07-11",
    "datePublished": "2013-07-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Neptunomonas japonica DSM 18939"
        ],
        "sample_taxid": [
            "1122599"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.258 MB",
        "sample_ph_range": {
            "min": 7085.0,
            "max": 7085.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4391552",
        "Number of Sequences": "39",
        "Longest Sequences (bp)": "424979",
        "N50 (bp)": "195418",
        "Gap Ratio (%)": "0.018672",
        "GCcontent (%)": "43.7",
        "Number of CDSs": "4113",
        "Average Protein Length": "315.9",
        "Coding Ratio (%)": "88.8",
        "Number of rRNAs": "6",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
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                "species_taxid": 1045558,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Neptunomonas qingdaonensis",
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            },
            {
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                "ani_threshold": 95,
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            {
                "organism_name": "Neptunomonas antarctica",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amphritea ceti",
                "strain": "strain=KCTC 42154",
                "accession": "GCA_024347215.1",
                "taxid": 1524258,
                "species_taxid": 1524258,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0538,
                "matched_fragments": 84,
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                "status": "below_threshold"
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        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
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                "accession": "GCF_000422765.1",
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                "total_fragments": 1442,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Neptunomonas",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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                "mean_intra_species_ani": "N/A",
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        ]
    },
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
        "Neptunomonas",
        "japonica",
        "DSM",
        "18939"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}