{
    "type": "genome",
    "identifier": "GCF_000422905.1",
    "organism": "Paenibacillus alginolyticus DSM 5050 = NBRC 15375",
    "title": "Paenibacillus alginolyticus DSM 5050 = NBRC 15375",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000422905.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441166",
        "wgs_master": "AUGY00000000.1",
        "refseq_category": "na",
        "taxid": "1122915",
        "species_taxid": "59839",
        "organism_name": "Paenibacillus alginolyticus DSM 5050 = NBRC 15375",
        "infraspecific_name": "strain=DSM 5050",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/11",
        "asm_name": "ASM42290v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000422905.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/422/905/GCF_000422905.1_ASM42290v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8329305",
        "genome_size_ungapped": "8324978",
        "gc_percent": "45.000000",
        "replicon_count": "0",
        "scaffold_count": "214",
        "contig_count": "224",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000422905.1-RS_2024_12_23",
        "annotation_date": "2024-12-23",
        "total_gene_count": "8081",
        "protein_coding_gene_count": "7709",
        "non_coding_gene_count": "102",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-11",
    "dateModified": "2013-07-11",
    "datePublished": "2013-07-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus alginolyticus DSM 5050 = NBRC 15375"
        ],
        "sample_taxid": [
            "1122915"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "2.400 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8329305",
        "Number of Sequences": "214",
        "Longest Sequences (bp)": "364710",
        "N50 (bp)": "73459",
        "Gap Ratio (%)": "0.051949",
        "GCcontent (%)": "44.8",
        "Number of CDSs": "7864",
        "Average Protein Length": "298.6",
        "Coding Ratio (%)": "84.6",
        "Number of rRNAs": "5",
        "Number of tRNAs": "85",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Paenibacillus alginolyticus",
                "strain": "strain=DSM 5050",
                "accession": "GCA_000422905.1",
                "taxid": 59839,
                "species_taxid": 59839,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2652,
                "total_fragments": 2665,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paenibacillus alginolyticus",
                "strain": "strain=NBRC 15375",
                "accession": "GCA_004000725.1",
                "taxid": 59839,
                "species_taxid": 59839,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9374,
                "matched_fragments": 2518,
                "total_fragments": 2665,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paenibacillus frigoriresistens",
                "strain": "strain=LMG 31322",
                "accession": "GCA_013266765.1",
                "taxid": 1143711,
                "species_taxid": 1143711,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.9511,
                "matched_fragments": 1876,
                "total_fragments": 2665,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paenibacillus phytorum",
                "strain": "strain=LMG 31458",
                "accession": "GCA_013141715.1",
                "taxid": 2654977,
                "species_taxid": 2654977,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.393,
                "matched_fragments": 1816,
                "total_fragments": 2665,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus germinis",
                "strain": "strain=LMG 31460",
                "accession": "GCA_013141785.1",
                "taxid": 2654979,
                "species_taxid": 2654979,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.3227,
                "matched_fragments": 1779,
                "total_fragments": 2665,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000422905.1",
                "gtdb_species": "s__Paenibacillus_E alginolyticus",
                "ani": 100.0,
                "matched_fragments": 2652,
                "total_fragments": 2665,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__NBRC-103111;g__Paenibacillus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "96.94",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000799595.1",
                "gtdb_species": "s__Paenibacillus_E chondroitinus_A",
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                "matched_fragments": 1725,
                "total_fragments": 2665,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__NBRC-103111;g__Paenibacillus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013141715.1",
                "gtdb_species": "s__Paenibacillus_E phytorum",
                "ani": 91.3954,
                "matched_fragments": 1816,
                "total_fragments": 2665,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__NBRC-103111;g__Paenibacillus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.60",
                "min_intra_species_ani": "95.60",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001426375.1",
                "gtdb_species": "s__Paenibacillus_E sp001426375",
                "ani": 90.9301,
                "matched_fragments": 1761,
                "total_fragments": 2665,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__NBRC-103111;g__Paenibacillus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.92",
                "min_intra_species_ani": "98.92",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001429545.1",
                "gtdb_species": "s__Paenibacillus_E sp001429545",
                "ani": 90.919,
                "matched_fragments": 1560,
                "total_fragments": 2665,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__NBRC-103111;g__Paenibacillus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.602,
        "doubling_h": 0.565,
        "growth_tmp": 30.0,
        "optimum_tmp": 29.0,
        "optimum_ph": 7.238,
        "genome_size": 8283090.5,
        "gc_content": 44.835,
        "coding_genes": 5381.029,
        "rRNA16S_genes": 10.237,
        "tRNA_genes": 93.313,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Paenibacillus",
        "alginolyticus",
        "DSM",
        "5050",
        "=",
        "NBRC",
        "15375"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}