{
    "type": "genome",
    "identifier": "GCF_000423025.1",
    "organism": "Gordonia shandongensis DSM 45094",
    "title": "Gordonia shandongensis DSM 45094",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000423025.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02440656",
        "wgs_master": "AUHE00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1121928",
        "species_taxid": "376351",
        "organism_name": "Gordonia shandongensis DSM 45094",
        "infraspecific_name": "strain=DSM 45094",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/11",
        "asm_name": "ASM42302v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000423025.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/423/025/GCF_000423025.1_ASM42302v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3330647",
        "genome_size_ungapped": "3330007",
        "gc_percent": "69.500000",
        "replicon_count": "0",
        "scaffold_count": "33",
        "contig_count": "35",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000423025.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "3153",
        "protein_coding_gene_count": "3049",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-11",
    "dateModified": "2013-07-11",
    "datePublished": "2013-07-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gordonia shandongensis DSM 45094"
        ],
        "sample_taxid": [
            "1121928"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.898 MB",
        "sample_ph_range": {
            "min": 5590.0,
            "max": 5590.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3330647",
        "Number of Sequences": "33",
        "Longest Sequences (bp)": "553378",
        "N50 (bp)": "169075",
        "Gap Ratio (%)": "0.019215",
        "GCcontent (%)": "69.3",
        "Number of CDSs": "3090",
        "Average Protein Length": "330.0",
        "Coding Ratio (%)": "91.8",
        "Number of rRNAs": "4",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Gordonia shandongensis",
                "strain": "strain=DSM 45094",
                "accession": "GCA_000423025.1",
                "taxid": 376351,
                "species_taxid": 376351,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1088,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Gordonia phthalatica",
                "strain": "strain=QH-11",
                "accession": "GCA_001305675.1",
                "taxid": 1136941,
                "species_taxid": 1136941,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1676,
                "matched_fragments": 751,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia sihwensis",
                "strain": "strain=NBRC 108236",
                "accession": "GCA_000333035.1",
                "taxid": 173559,
                "species_taxid": 173559,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9799,
                "matched_fragments": 702,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia neofelifaecis",
                "strain": "strain=NRRL B-59395",
                "accession": "GCA_000192435.2",
                "taxid": 945692,
                "species_taxid": 945692,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7953,
                "matched_fragments": 748,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia hydrophobica",
                "strain": "strain=NBRC 16057",
                "accession": "GCA_001592365.1",
                "taxid": 40516,
                "species_taxid": 40516,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6841,
                "matched_fragments": 725,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia spumicola",
                "strain": "strain=NBRC 107696",
                "accession": "GCA_009932475.1",
                "taxid": 589161,
                "species_taxid": 589161,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.027,
                "matched_fragments": 655,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia humi",
                "strain": "strain=DSM 45298",
                "accession": "GCA_014197435.1",
                "taxid": 686429,
                "species_taxid": 686429,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9528,
                "matched_fragments": 641,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia malaquae",
                "strain": "strain=DSM 45064",
                "accession": "GCA_900105435.1",
                "taxid": 410332,
                "species_taxid": 410332,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4794,
                "matched_fragments": 620,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia paraffinivorans",
                "strain": "strain=NBRC 108238",
                "accession": "GCA_000344155.1",
                "taxid": 175628,
                "species_taxid": 175628,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0102,
                "matched_fragments": 529,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000423025.1",
                "gtdb_species": "s__Gordonia shandongensis",
                "ani": 100.0,
                "matched_fragments": 1088,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001305675.1",
                "gtdb_species": "s__Gordonia phthalatica",
                "ani": 81.1615,
                "matched_fragments": 753,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000333035.1",
                "gtdb_species": "s__Gordonia sihwensis",
                "ani": 80.9705,
                "matched_fragments": 703,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.38",
                "min_intra_species_ani": "98.97",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000192435.1",
                "gtdb_species": "s__Gordonia neofelifaecis",
                "ani": 80.8072,
                "matched_fragments": 747,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001592365.1",
                "gtdb_species": "s__Gordonia hydrophobica",
                "ani": 80.689,
                "matched_fragments": 724,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009932475.1",
                "gtdb_species": "s__Gordonia spumicola",
                "ani": 80.0055,
                "matched_fragments": 658,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014197435.1",
                "gtdb_species": "s__Gordonia humi",
                "ani": 79.9611,
                "matched_fragments": 640,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000344135.1",
                "gtdb_species": "s__Gordonia malaquae",
                "ani": 79.453,
                "matched_fragments": 609,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000344155.1",
                "gtdb_species": "s__Gordonia paraffinivorans",
                "ani": 79.0538,
                "matched_fragments": 524,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "98.74",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 12,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.29,
        "cell_length": -0.067,
        "doubling_h": null,
        "growth_tmp": 29.0,
        "optimum_tmp": 28.5,
        "optimum_ph": 7.3,
        "genome_size": 3330332.0,
        "gc_content": 69.3,
        "coding_genes": 4526.729,
        "rRNA16S_genes": 2.666,
        "tRNA_genes": 48.25,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Gordonia",
        "shandongensis",
        "DSM",
        "45094"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}