{
    "type": "genome",
    "identifier": "GCF_000423105.1",
    "organism": "Halalkalibacillus halophilus DSM 18494",
    "title": "Halalkalibacillus halophilus DSM 18494",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000423105.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02440657",
        "wgs_master": "AUHI00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1121936",
        "species_taxid": "392827",
        "organism_name": "Halalkalibacillus halophilus DSM 18494",
        "infraspecific_name": "strain=DSM 18494",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/11",
        "asm_name": "ASM42310v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000423105.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/423/105/GCF_000423105.1_ASM42310v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2707549",
        "genome_size_ungapped": "2707054",
        "gc_percent": "37.500000",
        "replicon_count": "0",
        "scaffold_count": "25",
        "contig_count": "27",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000423105.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "2845",
        "protein_coding_gene_count": "2748",
        "non_coding_gene_count": "79",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-11",
    "dateModified": "2013-07-11",
    "datePublished": "2013-07-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halalkalibacillus halophilus DSM 18494"
        ],
        "sample_taxid": [
            "1121936"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "0.770 MB",
        "sample_ph_range": {
            "min": 8590.0,
            "max": 8590.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2707549",
        "Number of Sequences": "25",
        "Longest Sequences (bp)": "568519",
        "N50 (bp)": "199548",
        "Gap Ratio (%)": "0.018282",
        "GCcontent (%)": "37.4",
        "Number of CDSs": "2764",
        "Average Protein Length": "287.5",
        "Coding Ratio (%)": "88.1",
        "Number of rRNAs": "5",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Halalkalibacillus halophilus",
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                "accession": "GCA_000423105.1",
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                "species_taxid": 392827,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 887,
                "total_fragments": 889,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Alkalibacillus aidingensis",
                "strain": "strain=YIM 98829",
                "accession": "GCA_014595945.1",
                "taxid": 2747607,
                "species_taxid": 2747607,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.425,
                "matched_fragments": 144,
                "total_fragments": 889,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkalibacillus haloalkaliphilus",
                "strain": "strain=NBRC 103110",
                "accession": "GCA_007991275.1",
                "taxid": 94136,
                "species_taxid": 94136,
                "relation_to_type": "type",
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                "ani": 77.3096,
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                "total_fragments": 889,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkalibacillus almallahensis",
                "strain": "strain=CECT 8373",
                "accession": "GCA_011761495.1",
                "taxid": 1379154,
                "species_taxid": 1379154,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9702,
                "matched_fragments": 128,
                "total_fragments": 889,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenuibacillus multivorans",
                "strain": "strain=NBRC 100370",
                "accession": "GCA_007989445.1",
                "taxid": 237069,
                "species_taxid": 237069,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5535,
                "matched_fragments": 92,
                "total_fragments": 889,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenuibacillus multivorans",
                "strain": "strain=CGMCC 1.3442",
                "accession": "GCA_900103915.1",
                "taxid": 237069,
                "species_taxid": 237069,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4867,
                "matched_fragments": 95,
                "total_fragments": 889,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000423105.1",
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                "matched_fragments": 887,
                "total_fragments": 889,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Halalkalibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Alkalibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Alkalibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004402015.1",
                "gtdb_species": "s__Filobacillus milosensis",
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                "total_fragments": 889,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Filobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Alkalibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_001311865.1",
                "gtdb_species": "s__Piscibacillus salipiscarius",
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                "total_fragments": 889,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Piscibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900103915.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Tenuibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.456,
        "cell_length": 0.352,
        "doubling_h": null,
        "growth_tmp": 32.0,
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        "optimum_ph": 8.75,
        "genome_size": 2709523.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Halalkalibacillus",
        "halophilus",
        "DSM",
        "18494"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}