{
    "type": "genome",
    "identifier": "GCF_000423205.1",
    "organism": "Jonesia quinghaiensis DSM 15701",
    "title": "Jonesia quinghaiensis DSM 15701",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000423205.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441507",
        "wgs_master": "AUHN00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1122130",
        "species_taxid": "262806",
        "organism_name": "Jonesia quinghaiensis DSM 15701",
        "infraspecific_name": "strain=DSM 15701",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/11",
        "asm_name": "ASM42320v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000423205.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/423/205/GCF_000423205.1_ASM42320v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3038127",
        "genome_size_ungapped": "3037772",
        "gc_percent": "57.000000",
        "replicon_count": "0",
        "scaffold_count": "12",
        "contig_count": "13",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000423205.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "2771",
        "protein_coding_gene_count": "2693",
        "non_coding_gene_count": "66",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-11",
    "dateModified": "2013-07-11",
    "datePublished": "2013-07-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Jonesia quinghaiensis DSM 15701"
        ],
        "sample_taxid": [
            "1122130"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.864 MB",
        "sample_ph_range": {
            "min": 79.0,
            "max": 79.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3038127",
        "Number of Sequences": "12",
        "Longest Sequences (bp)": "667219",
        "N50 (bp)": "486116",
        "Gap Ratio (%)": "0.011685",
        "GCcontent (%)": "57.1",
        "Number of CDSs": "2775",
        "Average Protein Length": "326.2",
        "Coding Ratio (%)": "89.4",
        "Number of rRNAs": "6",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Jonesia quinghaiensis",
                "strain": "strain=DSM 15701",
                "accession": "GCA_000423205.1",
                "taxid": 262806,
                "species_taxid": 262806,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1008,
                "total_fragments": 1008,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Jonesia denitrificans",
                "strain": "strain=FDAARGOS 1440",
                "accession": "GCA_019048465.1",
                "taxid": 43674,
                "species_taxid": 43674,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.839,
                "matched_fragments": 295,
                "total_fragments": 1008,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jonesia denitrificans",
                "strain": "strain=DSM 20603",
                "accession": "GCA_000024065.1",
                "taxid": 43674,
                "species_taxid": 43674,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8199,
                "matched_fragments": 301,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jonesia denitrificans",
                "strain": "strain=NCTC10816",
                "accession": "GCA_900475835.1",
                "taxid": 43674,
                "species_taxid": 43674,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7913,
                "matched_fragments": 302,
                "total_fragments": 1008,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sanguibacter gelidistatuariae",
                "strain": "strain=ISLP-3",
                "accession": "GCA_900096585.1",
                "taxid": 1814289,
                "species_taxid": 1814289,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0538,
                "matched_fragments": 66,
                "total_fragments": 1008,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000423205.1",
                "gtdb_species": "s__Jonesia quinghaiensis",
                "ani": 100.0,
                "matched_fragments": 1008,
                "total_fragments": 1008,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Jonesia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000024065.1",
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                "total_fragments": 1008,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Jonesia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000312125.1",
                "gtdb_species": "s__Timonella senegalensis",
                "ani": 78.0633,
                "matched_fragments": 111,
                "total_fragments": 1008,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Timonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.10",
                "min_intra_species_ani": "97.43",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_900096585.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Sanguibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001552735.1",
                "gtdb_species": "s__Sanguibacter suarezii",
                "ani": 76.707,
                "matched_fragments": 78,
                "total_fragments": 1008,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Sanguibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003946865.1",
                "gtdb_species": "s__Antribacter gilvus",
                "ani": 76.3263,
                "matched_fragments": 52,
                "total_fragments": 1008,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Antribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.21,
        "doubling_h": null,
        "growth_tmp": 29.0,
        "optimum_tmp": 25.0,
        "optimum_ph": 8.0,
        "genome_size": 3043715.0,
        "gc_content": 58.4,
        "coding_genes": 2475.6,
        "rRNA16S_genes": 5.0,
        "tRNA_genes": 55.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Jonesia",
        "quinghaiensis",
        "DSM",
        "15701"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}