{ "type": "genome", "identifier": "GCF_000423345.1", "organism": "Marinimicrobium agarilyticum DSM 16975", "title": "Marinimicrobium agarilyticum DSM 16975", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000423345.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441511", "wgs_master": "AUHU00000000.1", "refseq_category": "reference genome", "taxid": "1122194", "species_taxid": "306546", "organism_name": "Marinimicrobium agarilyticum DSM 16975", "infraspecific_name": "strain=DSM 16975", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/11", "asm_name": "ASM42334v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000423345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/423/345/GCF_000423345.1_ASM42334v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4502291", "genome_size_ungapped": "4500098", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000423345.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "3806", "protein_coding_gene_count": "3723", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-11", "dateModified": "2013-07-11", "datePublished": "2013-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinimicrobium agarilyticum DSM 16975" ], "sample_taxid": [ "1122194" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.281 MB", "sample_ph_range": { "min": 60105.0, "max": 60105.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4502291", "Number of Sequences": "29", "Longest Sequences (bp)": "756692", "N50 (bp)": "458963", "Gap Ratio (%)": "0.048709", "GCcontent (%)": "57.9", "Number of CDSs": "3782", "Average Protein Length": "350.0", "Coding Ratio (%)": "88.2", "Number of rRNAs": "12", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinimicrobium agarilyticum", "strain": "strain=DSM 16975", "accession": "GCA_000423345.1", "taxid": 306546, "species_taxid": 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