{
    "type": "genome",
    "identifier": "GCF_000423545.1",
    "organism": "Metapseudomonas resinovorans DSM 21078",
    "title": "Metapseudomonas resinovorans DSM 21078",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000423545.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441499",
        "wgs_master": "AUIE00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1123020",
        "species_taxid": "53412",
        "organism_name": "Metapseudomonas resinovorans DSM 21078",
        "infraspecific_name": "strain=DSM 21078",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/11",
        "asm_name": "ASM42354v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000423545.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/423/545/GCF_000423545.1_ASM42354v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6027681",
        "genome_size_ungapped": "6023876",
        "gc_percent": "63.500000",
        "replicon_count": "0",
        "scaffold_count": "53",
        "contig_count": "59",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000423545.1-RS_2024_10_21",
        "annotation_date": "2024-10-21",
        "total_gene_count": "5637",
        "protein_coding_gene_count": "5485",
        "non_coding_gene_count": "66",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-11",
    "dateModified": "2013-07-11",
    "datePublished": "2013-07-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Metapseudomonas resinovorans DSM 21078"
        ],
        "sample_taxid": [
            "1123020"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "1.677 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6027681",
        "Number of Sequences": "53",
        "Longest Sequences (bp)": "564385",
        "N50 (bp)": "197842",
        "Gap Ratio (%)": "0.063125",
        "GCcontent (%)": "63.6",
        "Number of CDSs": "5525",
        "Average Protein Length": "321.3",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "65",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pseudomonas furukawaii",
                "strain": "strain=KF707",
                "accession": "GCA_002355475.1",
                "taxid": 1149133,
                "species_taxid": 1149133,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.321,
                "matched_fragments": 1475,
                "total_fragments": 1979,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas furukawaii",
                "strain": "strain=KF707",
                "accession": "GCA_000262065.3",
                "taxid": 1149133,
                "species_taxid": 1149133,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.3012,
                "matched_fragments": 1461,
                "total_fragments": 1979,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas tohonis",
                "strain": "strain=TUM18999",
                "accession": "GCA_012767755.2",
                "taxid": 2725477,
                "species_taxid": 2725477,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2554,
                "matched_fragments": 1249,
                "total_fragments": 1979,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas otitidis",
                "strain": "strain=DSM 17224",
                "accession": "GCA_900111835.1",
                "taxid": 319939,
                "species_taxid": 319939,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 84.0288,
                "matched_fragments": 1191,
                "total_fragments": 1979,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas delhiensis",
                "strain": "strain=CCM 7361",
                "accession": "GCA_900099945.1",
                "taxid": 366289,
                "species_taxid": 366289,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.7791,
                "matched_fragments": 1126,
                "total_fragments": 1979,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas delhiensis",
                "strain": "strain=RLD-1",
                "accession": "GCA_900187975.1",
                "taxid": 366289,
                "species_taxid": 366289,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.7565,
                "matched_fragments": 1136,
                "total_fragments": 1979,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas carbonaria",
                "strain": "strain=CIP 111764",
                "accession": "GCA_904061905.1",
                "taxid": 2762745,
                "species_taxid": 2762745,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6161,
                "matched_fragments": 1066,
                "total_fragments": 1979,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas alcaligenes",
                "strain": "strain=NCTC10367",
                "accession": "GCA_900455475.1",
                "taxid": 43263,
                "species_taxid": 43263,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4005,
                "matched_fragments": 936,
                "total_fragments": 1979,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas alcaligenes",
                "strain": "strain=NBRC 14159",
                "accession": "GCA_000467105.1",
                "taxid": 43263,
                "species_taxid": 43263,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3856,
                "matched_fragments": 922,
                "total_fragments": 1979,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas jinjuensis",
                "strain": "strain=JCM 21621",
                "accession": "GCA_900103845.1",
                "taxid": 198616,
                "species_taxid": 198616,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3547,
                "matched_fragments": 1053,
                "total_fragments": 1979,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas knackmussii",
                "strain": "strain=B13",
                "accession": "GCA_000689415.1",
                "taxid": 65741,
                "species_taxid": 65741,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2294,
                "matched_fragments": 1091,
                "total_fragments": 1979,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas lalucatii",
                "strain": "strain=R1b54",
                "accession": "GCA_018398425.1",
                "taxid": 1424203,
                "species_taxid": 1424203,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2077,
                "matched_fragments": 963,
                "total_fragments": 1979,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas benzenivorans",
                "strain": "strain=DSM 8628",
                "accession": "GCA_900100495.1",
                "taxid": 556533,
                "species_taxid": 556533,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9821,
                "matched_fragments": 1015,
                "total_fragments": 1979,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas cavernae",
                "strain": "strain=K2W31S-8",
                "accession": "GCA_003595175.1",
                "taxid": 2320867,
                "species_taxid": 2320867,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8715,
                "matched_fragments": 1019,
                "total_fragments": 1979,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas campi",
                "strain": "strain=S1-A32-2",
                "accession": "GCA_013200955.2",
                "taxid": 2731681,
                "species_taxid": 2731681,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8388,
                "matched_fragments": 890,
                "total_fragments": 1979,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas insulae",
                "strain": "strain=UL073",
                "accession": "GCA_016901015.1",
                "taxid": 2809017,
                "species_taxid": 2809017,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7193,
                "matched_fragments": 992,
                "total_fragments": 1979,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aeruginosa",
                "strain": "strain=DSM 50071",
                "accession": "GCA_024169805.1",
                "taxid": 287,
                "species_taxid": 287,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6388,
                "matched_fragments": 999,
                "total_fragments": 1979,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aromaticivorans",
                "strain": "strain=MAP12",
                "accession": "GCA_019097855.1",
                "taxid": 2849492,
                "species_taxid": 2849492,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2951,
                "matched_fragments": 724,
                "total_fragments": 1979,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas linyingensis",
                "strain": "strain=LMG 25967",
                "accession": "GCA_900109175.1",
                "taxid": 915471,
                "species_taxid": 915471,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2922,
                "matched_fragments": 771,
                "total_fragments": 1979,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas sagittaria",
                "strain": "strain=JCM 18195",
                "accession": "GCA_900115715.1",
                "taxid": 1135990,
                "species_taxid": 1135990,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2699,
                "matched_fragments": 784,
                "total_fragments": 1979,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000423545.1",
                "gtdb_species": "s__Pseudomonas_F resinovorans",
                "ani": 100.0,
                "matched_fragments": 1976,
                "total_fragments": 1979,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.91",
                "min_intra_species_ani": "98.91",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_008807375.1",
                "gtdb_species": "s__Pseudomonas_F lalkuanensis",
                "ani": 88.4047,
                "matched_fragments": 1527,
                "total_fragments": 1979,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001708505.1",
                "gtdb_species": "s__Pseudomonas_F sp001708505",
                "ani": 88.3401,
                "matched_fragments": 1485,
                "total_fragments": 1979,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014700075.1",
                "gtdb_species": "s__Pseudomonas_F sp014700075",
                "ani": 88.3199,
                "matched_fragments": 1483,
                "total_fragments": 1979,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013393345.1",
                "gtdb_species": "s__Pseudomonas_F resinovorans_C",
                "ani": 88.1466,
                "matched_fragments": 1523,
                "total_fragments": 1979,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.04",
                "min_intra_species_ani": "95.04",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000412695.1",
                "gtdb_species": "s__Pseudomonas_F resinovorans_A",
                "ani": 87.9784,
                "matched_fragments": 1550,
                "total_fragments": 1979,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000949385.2",
                "gtdb_species": "s__Pseudomonas_F sp000949385",
                "ani": 87.479,
                "matched_fragments": 1437,
                "total_fragments": 1979,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Metapseudomonas",
        "resinovorans",
        "DSM",
        "21078"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}