{ "type": "genome", "identifier": "GCF_000423745.1", "organism": "Streptococcus plurextorum DSM 22810", "title": "Streptococcus plurextorum DSM 22810", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000423745.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441159", "wgs_master": "AUIO00000000.1", "refseq_category": "reference genome", "taxid": "1123314", "species_taxid": "456876", "organism_name": "Streptococcus plurextorum DSM 22810", "infraspecific_name": "strain=DSM 22810", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/11", "asm_name": "ASM42374v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000423745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/423/745/GCF_000423745.1_ASM42374v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2103464", "genome_size_ungapped": "2100648", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000423745.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "2139", "protein_coding_gene_count": "2035", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-11", "dateModified": "2013-07-11", "datePublished": "2013-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus plurextorum DSM 22810" ], "sample_taxid": [ "1123314" ], "sample_host_organism": [ "Sus scrofa" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "0.598 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2103464", "Number of Sequences": "33", "Longest Sequences (bp)": "401990", "N50 (bp)": "136776", "Gap Ratio (%)": "0.133874", "GCcontent (%)": "41.1", "Number of CDSs": "2070", "Average Protein Length": "296.6", "Coding Ratio (%)": "87.6", "Number of rRNAs": "2", "Number of tRNAs": "31", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus plurextorum", "strain": "strain=DSM 22810", "accession": "GCA_000423745.1", "taxid": 456876, "species_taxid": 456876, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 682, "total_fragments": 684, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus suis", "strain": "strain=NCTC10234", "accession": "GCA_900475585.1", "taxid": 1307, "species_taxid": 1307, "relation_to_type": "type", "validated": true, "ani": 82.8334, "matched_fragments": 175, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus suis", "strain": "strain=S735", "accession": "GCA_000294495.1", "taxid": 1307, "species_taxid": 1307, "relation_to_type": "type", "validated": true, "ani": 82.8219, "matched_fragments": 176, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus porci", "strain": "strain=DSM 23759", "accession": "GCA_000423765.1", "taxid": 502567, "species_taxid": 502567, "relation_to_type": "type", "validated": true, "ani": 82.3263, "matched_fragments": 242, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 82.1244, "matched_fragments": 150, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus hyovaginalis", "strain": "strain=DSM 12219", "accession": "GCA_000420785.1", "taxid": 149015, "species_taxid": 149015, "relation_to_type": "type", "validated": true, "ani": 81.4777, "matched_fragments": 115, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pseudoporcinus", "strain": "strain=LQ 940-04", "accession": "GCA_000188035.3", "taxid": 361101, "species_taxid": 361101, "relation_to_type": "type", "validated": true, "ani": 80.9608, "matched_fragments": 88, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pseudoporcinus", "strain": "strain=NCTC13786", "accession": "GCA_900637075.1", "taxid": 361101, "species_taxid": 361101, "relation_to_type": "type", "validated": true, "ani": 80.8875, "matched_fragments": 89, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 80.3995, "matched_fragments": 132, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus canis", "strain": "strain=NCTC12191", "accession": "GCA_900636575.1", "taxid": 1329, "species_taxid": 1329, "relation_to_type": "type", "validated": true, "ani": 80.1757, "matched_fragments": 113, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus salivarius", "strain": "strain=JCM 5707", "accession": "GCA_019972895.1", "taxid": 1304, "species_taxid": 1304, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1335, "matched_fragments": 91, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus hillyeri", "strain": "strain=28462", "accession": "GCA_003686955.1", "taxid": 2282420, "species_taxid": 2282420, "relation_to_type": "type", "validated": true, "ani": 78.9401, "matched_fragments": 206, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantarius", "strain": "strain=FDAARGOS_1019", "accession": "GCA_016127275.1", "taxid": 102684, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 78.8447, "matched_fragments": 104, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pyogenes", "strain": "strain=CCUG 4207", "accession": "GCA_004028355.1", "taxid": 1314, "species_taxid": 1314, "relation_to_type": "type", "validated": true, "ani": 78.8069, "matched_fragments": 93, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ruminantium", "strain": "strain=GUT187T", "accession": "GCA_003609975.1", "taxid": 1917441, "species_taxid": 1917441, "relation_to_type": "type", "validated": true, "ani": 78.7742, "matched_fragments": 117, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantarius", "strain": "strain=NCTC13760", "accession": "GCA_900459445.1", "taxid": 102684, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 78.747, "matched_fragments": 107, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantarius subsp. infantarius", "strain": "strain=ATCC BAA-102", "accession": "GCA_000154985.1", "taxid": 150054, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 78.7024, "matched_fragments": 107, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", "taxid": 2819619, "species_taxid": 2819619, "relation_to_type": "type", "validated": true, "ani": 78.6803, "matched_fragments": 96, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus henryi", "strain": "strain=DSM 19005", "accession": "GCA_000376985.1", "taxid": 439219, "species_taxid": 439219, "relation_to_type": "type", "validated": true, "ani": 78.6791, "matched_fragments": 132, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 78.6161, "matched_fragments": 85, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus lutetiensis", "strain": "strain=NCTC13774", "accession": "GCA_900475675.1", "taxid": 150055, "species_taxid": 150055, "relation_to_type": "type", "validated": true, "ani": 78.377, "matched_fragments": 96, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus lutetiensis", "strain": "strain=FDAARGOS_1158", "accession": "GCA_016725165.1", "taxid": 150055, "species_taxid": 150055, "relation_to_type": "type", "validated": true, "ani": 78.3695, "matched_fragments": 95, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus saliviloxodontae", "strain": "strain=DSM 27513", "accession": "GCA_016908655.1", "taxid": 1349416, "species_taxid": 1349416, 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