{ "type": "genome", "identifier": "GCF_000423765.1", "organism": "Streptococcus porci DSM 23759", "title": "Streptococcus porci DSM 23759", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000423765.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440826", "wgs_master": "AUIP00000000.1", "refseq_category": "reference genome", "taxid": "1123315", "species_taxid": "502567", "organism_name": "Streptococcus porci DSM 23759", "infraspecific_name": "strain=DSM 23759", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/11", "asm_name": "ASM42376v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000423765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/423/765/GCF_000423765.1_ASM42376v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2290936", "genome_size_ungapped": "2289021", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "35", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000423765.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "2343", "protein_coding_gene_count": "2206", "non_coding_gene_count": "42", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-11", "dateModified": "2013-07-11", "datePublished": "2013-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus porci DSM 23759" ], "sample_taxid": [ "1123315" ], "sample_host_organism": [ "Sus scrofa" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "0.653 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2290936", "Number of Sequences": "35", "Longest Sequences (bp)": "269282", "N50 (bp)": "125120", "Gap Ratio (%)": "0.083590", "GCcontent (%)": "40.8", "Number of CDSs": "2253", "Average Protein Length": "294.1", "Coding Ratio (%)": "86.8", "Number of rRNAs": "0", "Number of tRNAs": "31", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus porci", "strain": "strain=DSM 23759", "accession": "GCA_000423765.1", "taxid": 502567, "species_taxid": 502567, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 744, 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"below_threshold" }, { "organism_name": "Streptococcus suis", "strain": "strain=S735", "accession": "GCA_000294495.1", "taxid": 1307, "species_taxid": 1307, "relation_to_type": "type", "validated": true, "ani": 81.9729, "matched_fragments": 150, "total_fragments": 746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus hillyeri", "strain": "strain=28462", "accession": "GCA_003686955.1", "taxid": 2282420, "species_taxid": 2282420, "relation_to_type": "type", "validated": true, "ani": 79.8789, "matched_fragments": 285, "total_fragments": 746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ovis", "strain": "strain=DSM 16829", "accession": "GCA_000380125.1", "taxid": 82806, "species_taxid": 82806, "relation_to_type": "type", "validated": true, "ani": 79.8382, "matched_fragments": 129, "total_fragments": 746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus henryi", "strain": "strain=DSM 19005", "accession": "GCA_000376985.1", "taxid": 439219, "species_taxid": 439219, "relation_to_type": "type", "validated": true, "ani": 79.3886, "matched_fragments": 189, "total_fragments": 746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ruminantium", "strain": "strain=GUT187T", "accession": "GCA_003609975.1", "taxid": 1917441, "species_taxid": 1917441, "relation_to_type": "type", "validated": true, "ani": 79.0183, "matched_fragments": 104, "total_fragments": 746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 78.9857, "matched_fragments": 99, "total_fragments": 746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", 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