{
    "type": "genome",
    "identifier": "GCF_000423785.1",
    "organism": "Tetragenococcus muriaticus DSM 15685",
    "title": "Tetragenococcus muriaticus DSM 15685",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000423785.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441160",
        "wgs_master": "AUIQ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1123359",
        "species_taxid": "64642",
        "organism_name": "Tetragenococcus muriaticus DSM 15685",
        "infraspecific_name": "strain=DSM 15685",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/11",
        "asm_name": "ASM42378v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000423785.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/423/785/GCF_000423785.1_ASM42378v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2081554",
        "genome_size_ungapped": "2081234",
        "gc_percent": "36.000000",
        "replicon_count": "0",
        "scaffold_count": "109",
        "contig_count": "111",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000423785.1-RS_2024_04_26",
        "annotation_date": "2024-04-26",
        "total_gene_count": "2123",
        "protein_coding_gene_count": "1931",
        "non_coding_gene_count": "67",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-11",
    "dateModified": "2013-07-11",
    "datePublished": "2013-07-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Tetragenococcus muriaticus DSM 15685"
        ],
        "sample_taxid": [
            "1123359"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.590 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2081554",
        "Number of Sequences": "109",
        "Longest Sequences (bp)": "186503",
        "N50 (bp)": "30220",
        "Gap Ratio (%)": "0.015373",
        "GCcontent (%)": "35.9",
        "Number of CDSs": "2003",
        "Average Protein Length": "292.5",
        "Coding Ratio (%)": "84.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 631,
                "total_fragments": 643,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Tetragenococcus halophilus subsp. halophilus",
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                "taxid": 1513897,
                "species_taxid": 51669,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tetragenococcus halophilus subsp. flandriensis",
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                "ani_threshold": 95,
                "status": "below_threshold"
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                "taxid": 290335,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Tetragenococcus solitarius",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterococcus saccharolyticus subsp. saccharolyticus",
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            {
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            },
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                "organism_name": "Enterococcus columbae",
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            {
                "organism_name": "Enterococcus hirae",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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            "strain_heterogeneity": 0.0
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                "accession": "GCF_000423785.1",
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    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}