{
    "type": "genome",
    "identifier": "GCF_000423845.1",
    "organism": "Thermodesulfobacterium hveragerdense DSM 12571",
    "title": "Thermodesulfobacterium hveragerdense DSM 12571",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000423845.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441489",
        "wgs_master": "AUIT00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1123372",
        "species_taxid": "53424",
        "organism_name": "Thermodesulfobacterium hveragerdense DSM 12571",
        "infraspecific_name": "strain=DSM 12571",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/11",
        "asm_name": "ASM42384v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000423845.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/423/845/GCF_000423845.1_ASM42384v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1729593",
        "genome_size_ungapped": "1726163",
        "gc_percent": "37.000000",
        "replicon_count": "0",
        "scaffold_count": "42",
        "contig_count": "47",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000423845.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "1806",
        "protein_coding_gene_count": "1712",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-11",
    "dateModified": "2013-07-11",
    "datePublished": "2013-07-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermodesulfobacterium hveragerdense DSM 12571"
        ],
        "sample_taxid": [
            "1123372"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Iceland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.482 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1729593",
        "Number of Sequences": "42",
        "Longest Sequences (bp)": "195165",
        "N50 (bp)": "76596",
        "Gap Ratio (%)": "0.198313",
        "GCcontent (%)": "37.1",
        "Number of CDSs": "1703",
        "Average Protein Length": "310.7",
        "Coding Ratio (%)": "91.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "7"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Thermodesulfobacterium hveragerdense",
                "strain": "strain=DSM 12571",
                "accession": "GCA_000423845.1",
                "taxid": 53424,
                "species_taxid": 53424,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 554,
                "total_fragments": 556,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thermodesulfobacterium thermophilum",
                "strain": "strain=DSM 1276",
                "accession": "GCA_000421605.1",
                "taxid": 886,
                "species_taxid": 886,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.6591,
                "matched_fragments": 512,
                "total_fragments": 556,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermodesulfobacterium commune",
                "strain": "strain=DSM 2178",
                "accession": "GCA_000746435.1",
                "taxid": 1741,
                "species_taxid": 1741,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.93,
                "matched_fragments": 509,
                "total_fragments": 556,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermodesulfobacterium commune",
                "strain": "strain=DSM 2178",
                "accession": "GCA_000734015.1",
                "taxid": 1741,
                "species_taxid": 1741,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.8203,
                "matched_fragments": 522,
                "total_fragments": 556,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermodesulfobacterium hydrogeniphilum",
                "strain": "strain=DSM 14290",
                "accession": "GCA_000746255.1",
                "taxid": 161156,
                "species_taxid": 161156,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1901,
                "matched_fragments": 102,
                "total_fragments": 556,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000423845.1",
                "gtdb_species": "s__Thermodesulfobacterium hveragerdense",
                "ani": 100.0,
                "matched_fragments": 554,
                "total_fragments": 556,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Thermodesulfobacteria;o__Thermodesulfobacteriales;f__Thermodesulfobacteriaceae;g__Thermodesulfobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000421605.1",
                "gtdb_species": "s__Thermodesulfobacterium thermophilum",
                "ani": 94.6876,
                "matched_fragments": 511,
                "total_fragments": 556,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Thermodesulfobacteria;o__Thermodesulfobacteriales;f__Thermodesulfobacteriaceae;g__Thermodesulfobacterium",
                "ani_circumscription_radius": 95.9677,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000734015.1",
                "gtdb_species": "s__Thermodesulfobacterium commune",
                "ani": 93.826,
                "matched_fragments": 522,
                "total_fragments": 556,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Thermodesulfobacteria;o__Thermodesulfobacteriales;f__Thermodesulfobacteriaceae;g__Thermodesulfobacterium",
                "ani_circumscription_radius": 95.9677,
                "mean_intra_species_ani": "99.11",
                "min_intra_species_ani": "98.83",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_008630935.1",
                "gtdb_species": "s__Thermodesulfobacterium sp008630935",
                "ani": 80.1567,
                "matched_fragments": 402,
                "total_fragments": 556,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Thermodesulfobacteria;o__Thermodesulfobacteriales;f__Thermodesulfobacteriaceae;g__Thermodesulfobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000746255.1",
                "gtdb_species": "s__Thermodesulfobacterium hydrogeniphilum",
                "ani": 77.1632,
                "matched_fragments": 103,
                "total_fragments": 556,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Thermodesulfobacteria;o__Thermodesulfobacteriales;f__Thermodesulfobacteriaceae;g__Thermodesulfobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002877985.1",
                "gtdb_species": "s__Thermodesulfobacterium geofontis_A",
                "ani": 75.9323,
                "matched_fragments": 54,
                "total_fragments": 556,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Thermodesulfobacteria;o__Thermodesulfobacteriales;f__Thermodesulfobacteriaceae;g__Thermodesulfobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.412,
        "cell_length": 0.127,
        "doubling_h": 0.731,
        "growth_tmp": 67.5,
        "optimum_tmp": 70.0,
        "optimum_ph": null,
        "genome_size": 1729593.0,
        "gc_content": 37.0,
        "coding_genes": 1612.333,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 46.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Thermodesulfobacterium",
        "hveragerdense",
        "DSM",
        "12571"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}