{ "type": "genome", "identifier": "GCF_000424685.1", "organism": "Methylococcus capsulatus str. Texas = ATCC 19069", "title": "Methylococcus capsulatus str. Texas = ATCC 19069", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000424685.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441148", "wgs_master": "AUKJ00000000.1", "refseq_category": "na", "taxid": "1224744", "species_taxid": "414", "organism_name": "Methylococcus capsulatus str. 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Texas = ATCC 19069" ], "sample_taxid": [ "1224744" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.914 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3266263", "Number of Sequences": "20", "Longest Sequences (bp)": "787148", "N50 (bp)": "301813", "Gap Ratio (%)": "0.074979", "GCcontent (%)": "63.6", "Number of CDSs": "2966", "Average Protein Length": "330.8", "Coding Ratio (%)": "90.1", "Number of rRNAs": "12", "Number of tRNAs": "53", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylococcus capsulatus", "strain": "strain=ATCC 19069", 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aquatica", "strain": "strain=RIB1-20", "accession": "GCA_022662575.1", "taxid": 450364, "species_taxid": 450364, "relation_to_type": "type", "validated": true, "ani": 76.3861, "matched_fragments": 95, "total_fragments": 1077, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 76.3305, "matched_fragments": 76, "total_fragments": 1077, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas tumuqii", "strain": "strain=LAMW06", "accession": "GCA_013184545.1", "taxid": 2715755, "species_taxid": 2715755, "relation_to_type": "type", "validated": true, "ani": 76.3031, "matched_fragments": 96, "total_fragments": 1077, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Methylococcus", "capsulatus", "str.", "Texas", "=", "ATCC", "19069" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }