{ "type": "genome", "identifier": "GCF_000424985.1", "organism": "Arenibacter latericius DSM 15913", "title": "Arenibacter latericius DSM 15913", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000424985.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440812", "wgs_master": "AUKX00000000.1", "refseq_category": "reference genome", "taxid": "1121012", "species_taxid": "86104", "organism_name": "Arenibacter latericius DSM 15913", "infraspecific_name": "strain=DSM 15913", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/11", "asm_name": "ASM42498v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000424985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/424/985/GCF_000424985.1_ASM42498v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4480165", "genome_size_ungapped": "4477675", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "104", "contig_count": "112", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000424985.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3753", "protein_coding_gene_count": "3652", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-11", "dateModified": "2013-07-11", "datePublished": "2013-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Arenibacter latericius DSM 15913" ], "sample_taxid": [ "1121012" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.273 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4480165", "Number of Sequences": "104", "Longest Sequences (bp)": "219739", "N50 (bp)": "93553", "Gap Ratio (%)": "0.055578", "GCcontent (%)": "36.8", "Number of CDSs": "3592", "Average Protein Length": "346.3", "Coding Ratio (%)": "83.3", "Number of rRNAs": "4", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arenibacter latericius", "strain": "strain=DSM 15913", "accession": "GCA_000424985.1", "taxid": 86104, "species_taxid": 86104, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1433, "total_fragments": 1440, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Arenibacter certesii", "strain": "strain=KCTC 12113", "accession": "GCA_014651295.1", "taxid": 228955, "species_taxid": 228955, "relation_to_type": "type", "validated": true, "ani": 85.6744, "matched_fragments": 1157, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter certesii", "strain": "strain=DSM 19833", "accession": "GCA_000429545.1", "taxid": 228955, "species_taxid": 228955, "relation_to_type": "type", "validated": true, "ani": 85.6396, "matched_fragments": 1174, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter arenosicollis", "strain": "strain=BSSL-BM3", "accession": "GCA_014397245.1", "taxid": 2762274, "species_taxid": 2762274, "relation_to_type": "type", "validated": true, "ani": 77.4704, "matched_fragments": 303, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter catalasegens", "strain": "strain=P308H10", "accession": "GCA_002909235.1", "taxid": 2056779, "species_taxid": 2056779, "relation_to_type": "type", "validated": true, "ani": 77.4558, "matched_fragments": 301, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter echinorum", "strain": "strain=DSM 23522", "accession": "GCA_003259375.1", "taxid": 440515, "species_taxid": 440515, "relation_to_type": "type", "validated": true, "ani": 77.367, "matched_fragments": 279, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter troitsensis", "strain": "strain=DSM 19835", "accession": "GCA_900177645.1", "taxid": 188872, "species_taxid": 188872, "relation_to_type": "type", "validated": true, "ani": 77.3438, "matched_fragments": 274, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter palladensis", "strain": "strain=DSM 17539", "accession": "GCA_900129275.1", "taxid": 237373, "species_taxid": 237373, "relation_to_type": "type", "validated": true, "ani": 77.2671, "matched_fragments": 276, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter litoralis", "strain": "strain=SDRB-Phe2", "accession": "GCA_003075045.1", "taxid": 2059726, "species_taxid": 2059726, "relation_to_type": "type", "validated": true, "ani": 77.0021, "matched_fragments": 149, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saonia flava", "strain": "strain=DSM 29762", "accession": "GCA_011927795.1", "taxid": 523696, "species_taxid": 523696, "relation_to_type": "type", "validated": true, "ani": 76.7832, "matched_fragments": 138, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter algarum", "strain": "strain=RZ26", "accession": "GCA_005885635.1", "taxid": 2578118, "species_taxid": 2578118, "relation_to_type": "type", "validated": true, "ani": 76.5471, "matched_fragments": 99, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter caenipelagi", "strain": "strain=CECT 8455", "accession": "GCA_004364175.1", "taxid": 1447781, "species_taxid": 1447781, "relation_to_type": "type", "validated": true, "ani": 76.351, "matched_fragments": 153, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia barbeyronii", "strain": "strain=KMM 6746", "accession": "GCA_018603515.1", "taxid": 2748009, "species_taxid": 2748009, "relation_to_type": "type", "validated": true, "ani": 76.3243, "matched_fragments": 140, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter batillariae", "strain": "strain=G4M1", "accession": "GCA_017498485.1", "taxid": 2808900, "species_taxid": 2808900, "relation_to_type": "type", "validated": true, "ani": 75.8145, "matched_fragments": 51, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 75.5859, "matched_fragments": 53, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter septentrionalilitoris", "strain": "strain=ANORD1", "accession": "GCA_009832745.1", "taxid": 2494657, "species_taxid": 2494657, "relation_to_type": "type", "validated": true, "ani": 75.5291, "matched_fragments": 65, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000424985.1", "gtdb_species": "s__Arenibacter latericius", "ani": 100.0, "matched_fragments": 1433, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000429545.1", "gtdb_species": "s__Arenibacter certesii", "ani": 85.6356, "matched_fragments": 1175, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002150785.1", "gtdb_species": "s__Arenibacter amylolyticus", "ani": 79.8333, "matched_fragments": 675, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.19", "min_intra_species_ani": "99.19", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014397245.1", "gtdb_species": "s__Arenibacter arenosicollis", "ani": 77.4611, "matched_fragments": 304, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003259375.1", "gtdb_species": "s__Arenibacter echinorum", "ani": 77.3677, "matched_fragments": 278, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018860365.1", "gtdb_species": "s__Arenibacter algicola_B", "ani": 77.2782, "matched_fragments": 297, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900129275.1", "gtdb_species": "s__Arenibacter palladensis", "ani": 77.2646, "matched_fragments": 277, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.38", "min_intra_species_ani": "97.38", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003201775.1", "gtdb_species": "s__Arenibacter sp003201775", "ani": 77.2, "matched_fragments": 285, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003075045.1", "gtdb_species": "s__Maribacter litoralis", "ani": 77.001, "matched_fragments": 150, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.43", "min_intra_species_ani": "97.43", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_005885635.1", "gtdb_species": "s__RZ26 sp005885635", "ani": 76.5471, "matched_fragments": 99, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__RZ26", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002813425.1", "gtdb_species": "s__Cellulophaga sp002813425", "ani": 76.5196, "matched_fragments": 147, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Cellulophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000153165.2", "gtdb_species": "s__Maribacter_A sp000153165", "ani": 76.401, "matched_fragments": 111, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018861125.1", "gtdb_species": "s__Cellulophaga baltica_A", "ani": 76.397, "matched_fragments": 144, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Cellulophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004364175.1", "gtdb_species": "s__Maribacter caenipelagi", "ani": 76.351, "matched_fragments": 153, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000186265.1", "gtdb_species": "s__Cellulophaga algicola", "ani": 76.3435, "matched_fragments": 173, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Cellulophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "98.34", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_018883545.1", "gtdb_species": "s__Confluentibacter sp018883545", "ani": 76.0411, "matched_fragments": 55, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Confluentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.398, "cell_length": 0.477, "doubling_h": null, "growth_tmp": 29.0, "optimum_tmp": 24.0, "optimum_ph": 7.25, "genome_size": 4481579.5, "gc_content": 36.8, "coding_genes": 4881.5, "rRNA16S_genes": 3.0, "tRNA_genes": 42.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Arenibacter", "latericius", "DSM", "15913" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }