{ "type": "genome", "identifier": "GCF_000425145.1", "organism": "Pedobacter glucosidilyticus DSM 23534", "title": "Pedobacter glucosidilyticus DSM 23534", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000425145.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440815", "wgs_master": "AULF00000000.1", "refseq_category": "reference genome", "taxid": "540906", "species_taxid": "1122941", "organism_name": "Pedobacter glucosidilyticus DSM 23534", "infraspecific_name": "strain=DSM 23534", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/11", "asm_name": "ASM42514v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000425145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/425/145/GCF_000425145.1_ASM42514v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4021020", "genome_size_ungapped": "4015711", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "62", "contig_count": "70", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000425145.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "3482", "protein_coding_gene_count": "3403", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-11", "dateModified": "2013-07-11", "datePublished": "2013-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Pedobacter glucosidilyticus DSM 23534" ], "sample_taxid": [ "540906" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.120 MB", "sample_ph_range": { "min": 5590.0, "max": 5590.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4021020", "Number of Sequences": "62", "Longest Sequences (bp)": "362008", "N50 (bp)": "120372", "Gap Ratio (%)": "0.132031", "GCcontent (%)": "34.4", "Number of CDSs": "3360", "Average Protein Length": "351.5", "Coding Ratio (%)": "88.1", "Number of rRNAs": "4", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pedobacter glucosidilyticus", "strain": "strain=DSM 23534", "accession": "GCA_000425145.1", "taxid": 1122941, "species_taxid": 1122941, 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