{
    "type": "genome",
    "identifier": "GCF_000425165.1",
    "organism": "Photobacterium halotolerans DSM 18316",
    "title": "Photobacterium halotolerans DSM 18316",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000425165.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441155",
        "wgs_master": "AULG00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1122959",
        "species_taxid": "265726",
        "organism_name": "Photobacterium halotolerans DSM 18316",
        "infraspecific_name": "strain=DSM 18316",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/11",
        "asm_name": "ASM42516v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000425165.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/425/165/GCF_000425165.1_ASM42516v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4690166",
        "genome_size_ungapped": "4680007",
        "gc_percent": "51.000000",
        "replicon_count": "0",
        "scaffold_count": "53",
        "contig_count": "62",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000425165.1-RS_2024_03_29",
        "annotation_date": "2024-03-29",
        "total_gene_count": "4297",
        "protein_coding_gene_count": "4173",
        "non_coding_gene_count": "76",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-11",
    "dateModified": "2013-07-11",
    "datePublished": "2013-07-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Photobacterium halotolerans DSM 18316"
        ],
        "sample_taxid": [
            "1122959"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain"
        ],
        "sample_host_location_id": [],
        "data_size": "1.334 MB",
        "sample_ph_range": {
            "min": 5085.0,
            "max": 5085.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4690166",
        "Number of Sequences": "53",
        "Longest Sequences (bp)": "864215",
        "N50 (bp)": "264367",
        "Gap Ratio (%)": "0.216602",
        "GCcontent (%)": "50.9",
        "Number of CDSs": "4213",
        "Average Protein Length": "317.0",
        "Coding Ratio (%)": "85.4",
        "Number of rRNAs": "7",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Photobacterium halotolerans",
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                "accession": "GCA_000425165.1",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Photobacterium arenosum",
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                "species_taxid": 2774143,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium salinisoli",
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                "taxid": 1616783,
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            },
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                "organism_name": "Photobacterium galatheae",
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                "accession": "GCA_000695255.1",
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium galatheae",
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                "accession": "GCA_023653475.1",
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                "validated": true,
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                "matched_fragments": 902,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium ganghwense",
                "strain": "strain=JCM 12487",
                "accession": "GCA_003025595.1",
                "taxid": 320778,
                "species_taxid": 320778,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8058,
                "matched_fragments": 427,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium sanguinicancri",
                "strain": "strain=CECT 7579",
                "accession": "GCA_024346675.1",
                "taxid": 875932,
                "species_taxid": 875932,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1226,
                "matched_fragments": 212,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Grimontia hollisae",
                "strain": "strain=CIP 101886",
                "accession": "GCA_000176515.1",
                "taxid": 673,
                "species_taxid": 673,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9912,
                "matched_fragments": 198,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio furnissii",
                "strain": "strain=PartQ-Vfurnissii-RM8376",
                "accession": "GCA_022869905.1",
                "taxid": 29494,
                "species_taxid": 29494,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2904,
                "matched_fragments": 195,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia entomophila",
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                "accession": "GCA_021462285.1",
                "taxid": 42906,
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 89,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
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        "gtdb_result": [
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                "accession": "GCF_000425165.1",
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                "status": "conclusive"
            },
            {
                "accession": "GCF_014841115.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            {
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    "_bac2feature": {
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    },
    "_genome_taxon": [
        "Photobacterium",
        "halotolerans",
        "DSM",
        "18316"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}