{ "type": "genome", "identifier": "GCF_000425325.1", "organism": "Rathayibacter toxicus DSM 7488", "title": "Rathayibacter toxicus DSM 7488", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000425325.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440627", "wgs_master": "AUDF00000000.1", "refseq_category": "na", "taxid": "1123052", "species_taxid": "145458", "organism_name": "Rathayibacter toxicus DSM 7488", "infraspecific_name": "strain=DSM 7488", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/11", "asm_name": "ASM42532v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000425325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/425/325/GCF_000425325.1_ASM42532v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2299693", "genome_size_ungapped": "2291916", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000425325.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "2156", "protein_coding_gene_count": "2071", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-11", "dateModified": "2013-07-11", "datePublished": "2013-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Rathayibacter toxicus DSM 7488" ], "sample_taxid": [ "1123052" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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{ "organism_name": "Rathayibacter oskolensis", "strain": "strain=VKM Ac-2121", "accession": "GCA_900177245.1", "taxid": 1891671, "species_taxid": 1891671, "relation_to_type": "type", "validated": true, "ani": 78.6453, "matched_fragments": 315, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rathayibacter tritici", "strain": "strain=DSM 7486", "accession": "GCA_002932875.1", "taxid": 33888, "species_taxid": 33888, "relation_to_type": "type", "validated": true, "ani": 78.5951, "matched_fragments": 301, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rathayibacter rathayi", "strain": "strain=VKM Ac-1601", "accession": "GCA_009806975.1", "taxid": 33887, "species_taxid": 33887, "relation_to_type": "type", "validated": true, "ani": 78.4446, "matched_fragments": 292, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rathayibacter rathayi", "strain": "strain=VKM Ac-1601", "accession": "GCA_900215645.1", "taxid": 33887, "species_taxid": 33887, "relation_to_type": "type", "validated": true, "ani": 78.4412, "matched_fragments": 299, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rathayibacter iranicus", "strain": "strain=VKM Ac-1602", "accession": "GCA_003149025.1", "taxid": 59737, "species_taxid": 59737, "relation_to_type": "type", "validated": true, "ani": 78.4408, "matched_fragments": 301, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rathayibacter agropyri", "strain": "strain=VKM Ac-2828", "accession": "GCA_013249015.1", "taxid": 1634927, "species_taxid": 1634927, "relation_to_type": "type", "validated": true, "ani": 78.3908, "matched_fragments": 312, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Labedella endophytica", "strain": "strain=EGI 6500705", "accession": "GCA_003990045.1", 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78.904, "matched_fragments": 330, "total_fragments": 751, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rathayibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013205025.1", "gtdb_species": "s__Rathayibacter sp013205025", "ani": 78.884, "matched_fragments": 327, "total_fragments": 751, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rathayibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003044275.1", "gtdb_species": "s__Rathayibacter caricis", "ani": 78.8687, "matched_fragments": 317, 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