{ "type": "genome", "identifier": "GCF_000425345.1", "organism": "Rheinheimera baltica DSM 14885", "title": "Rheinheimera baltica DSM 14885", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000425345.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441194", "wgs_master": "AUDG00000000.1", "refseq_category": "na", "taxid": "1123053", "species_taxid": "67576", "organism_name": "Rheinheimera baltica DSM 14885", "infraspecific_name": "strain=DSM 14885", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/11", "asm_name": "ASM42534v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000425345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/425/345/GCF_000425345.1_ASM42534v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4351767", "genome_size_ungapped": "4349122", "gc_percent": "46.000000", "replicon_count": "0", "scaffold_count": "134", "contig_count": "137", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000425345.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "4093", "protein_coding_gene_count": "3953", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-11", "dateModified": "2013-07-11", "datePublished": "2013-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Rheinheimera baltica DSM 14885" ], "sample_taxid": [ "1123053" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Baltic Sea" ], "sample_host_location_id": [], "data_size": "1.244 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4351767", "Number of Sequences": "134", "Longest Sequences (bp)": "233572", "N50 (bp)": "60506", "Gap Ratio (%)": "0.060780", "GCcontent (%)": "46.2", "Number of CDSs": "3902", "Average Protein Length": "331.5", "Coding Ratio (%)": "89.2", "Number of rRNAs": "5", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rheinheimera baltica", "strain": "strain=DSM 14885", "accession": "GCA_000425345.1", "taxid": 67576, "species_taxid": 67576, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1373, "total_fragments": 1378, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rheinheimera maricola", "strain": "strain=MA-13", "accession": "GCA_016918075.2", "taxid": 2793282, "species_taxid": 2793282, "relation_to_type": "type", "validated": true, "ani": 81.2928, "matched_fragments": 623, "total_fragments": 1378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rheinheimera maricola", "strain": "strain=MA-13", "accession": "GCA_017824735.1", "taxid": 2793282, "species_taxid": 2793282, "relation_to_type": "type", "validated": true, "ani": 81.1039, "matched_fragments": 634, "total_fragments": 1378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rheinheimera lutimaris", "strain": "strain=YQF-2", "accession": "GCA_013283795.1", "taxid": 2740584, "species_taxid": 2740584, "relation_to_type": "type", "validated": true, "ani": 80.691, "matched_fragments": 598, "total_fragments": 1378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rheinheimera pacifica", "strain": "strain=DSM 17616", "accession": "GCA_900108485.1", "taxid": 173990, "species_taxid": 173990, "relation_to_type": "type", "validated": true, "ani": 80.2438, "matched_fragments": 580, "total_fragments": 1378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rheinheimera pleomorphica", "strain": "strain=PKS7", "accession": "GCA_011634895.1", "taxid": 2703963, "species_taxid": 2703963, "relation_to_type": "type", "validated": true, "ani": 80.1971, "matched_fragments": 559, "total_fragments": 1378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rheinheimera hassiensis", "strain": "strain=LMG 27268", "accession": "GCA_022436675.1", "taxid": 1193627, "species_taxid": 1193627, "relation_to_type": "type", "validated": true, "ani": 80.1811, "matched_fragments": 588, "total_fragments": 1378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rheinheimera 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