{ "type": "genome", "identifier": "GCF_000425385.1", "organism": "Pseudoduganella violaceinigra DSM 15887", "title": "Pseudoduganella violaceinigra DSM 15887", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000425385.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440629", "wgs_master": "AUDI00000000.1", "refseq_category": "reference genome", "taxid": "1121480", "species_taxid": "246602", "organism_name": "Pseudoduganella violaceinigra DSM 15887", "infraspecific_name": "strain=DSM 15887", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/11", "asm_name": "ASM42538v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000425385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/425/385/GCF_000425385.1_ASM42538v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6110349", "genome_size_ungapped": "6103405", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "48", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000425385.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "5822", "protein_coding_gene_count": "5691", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-11", "dateModified": "2013-07-11", "datePublished": "2013-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoduganella violaceinigra DSM 15887" ], "sample_taxid": [ "1121480" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.693 MB", "sample_ph_range": { "min": 72.0, "max": 72.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6110349", "Number of Sequences": "41", "Longest Sequences (bp)": "786796", "N50 (bp)": "346447", "Gap Ratio (%)": "0.113643", "GCcontent (%)": "63.0", "Number of CDSs": "5687", "Average Protein Length": "327.0", "Coding Ratio (%)": "91.3", "Number of rRNAs": "7", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoduganella guangdongensis", "strain": "strain=DS3", "accession": "GCA_009857475.1", "taxid": 2692179, "species_taxid": 2692179, 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