{ "type": "genome", "identifier": "GCF_000425485.1", "organism": "Flavobacterium tegetincola DSM 22377", "title": "Flavobacterium tegetincola DSM 22377", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000425485.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440861", "wgs_master": "AUDN00000000.1", "refseq_category": "reference genome", "taxid": "1121901", "species_taxid": "150172", "organism_name": "Flavobacterium tegetincola DSM 22377", "infraspecific_name": "strain=DSM 22377", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/11", "asm_name": "ASM42548v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000425485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/425/485/GCF_000425485.1_ASM42548v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3774544", "genome_size_ungapped": "3766984", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "53", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000425485.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "3398", "protein_coding_gene_count": "3316", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-11", "dateModified": "2013-07-11", "datePublished": "2013-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium tegetincola DSM 22377" ], "sample_taxid": [ "1121901" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "1.057 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3774544", "Number of Sequences": "41", "Longest Sequences (bp)": "401610", "N50 (bp)": "206853", "Gap Ratio (%)": "0.200289", "GCcontent (%)": "35.0", "Number of CDSs": "3317", "Average Protein Length": "324.4", "Coding Ratio (%)": "85.5", "Number of rRNAs": "4", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium tegetincola", "strain": "strain=DSM 22377", "accession": "GCA_000425485.1", "taxid": 150172, "species_taxid": 150172, 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"ani": 78.2147, "matched_fragments": 214, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium petrolei", "strain": "strain=Kopri-42", "accession": "GCA_003314435.2", "taxid": 2259594, "species_taxid": 2259594, "relation_to_type": "type", "validated": true, "ani": 78.2038, "matched_fragments": 223, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrolimnae", "strain": "strain=LMG 22018", "accession": "GCA_003312425.1", "taxid": 249351, "species_taxid": 249351, "relation_to_type": "type", "validated": true, "ani": 78.1376, "matched_fragments": 233, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium saccharophilum", "strain": "strain=DSM 1811", "accession": "GCA_900142735.1", "taxid": 29534, "species_taxid": 29534, "relation_to_type": "type", "validated": true, "ani": 78.0987, "matched_fragments": 211, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium undicola", "strain": "strain=BBQ-18", "accession": "GCA_009909155.2", "taxid": 1932779, "species_taxid": 1932779, "relation_to_type": "type", "validated": true, "ani": 78.0923, "matched_fragments": 198, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pectinovorum", "strain": "strain=DSM 6368", "accession": "GCA_900142715.1", "taxid": 29533, "species_taxid": 29533, "relation_to_type": "type", "validated": true, "ani": 77.9306, "matched_fragments": 219, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium degerlachei", "strain": "strain=DSM 15718", "accession": "GCA_900106645.1", "taxid": 229203, "species_taxid": 229203, "relation_to_type": "type", "validated": true, "ani": 77.9277, "matched_fragments": 206, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fluvii", "strain": "strain=DSM 19978", "accession": "GCA_900129545.1", "taxid": 468056, "species_taxid": 468056, "relation_to_type": "type", "validated": true, "ani": 77.8852, "matched_fragments": 190, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flevense", "strain": "strain=DSM 1076", "accession": "GCA_900142775.1", "taxid": 983, "species_taxid": 983, "relation_to_type": "type", "validated": true, "ani": 77.8809, "matched_fragments": 192, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium frigidarium", "strain": "strain=DSM 17623", "accession": "GCA_000425505.1", "taxid": 99286, "species_taxid": 99286, "relation_to_type": "type", "validated": true, "ani": 77.8711, "matched_fragments": 198, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flevense", "strain": "strain=NBRC 14960", "accession": "GCA_006539745.1", "taxid": 983, "species_taxid": 983, "relation_to_type": "type", "validated": true, "ani": 77.8209, "matched_fragments": 180, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium urumqiense", "strain": "strain=CGMCC 1.9230", "accession": "GCA_900108015.1", "taxid": 935224, "species_taxid": 935224, "relation_to_type": "type", "validated": true, "ani": 77.7141, "matched_fragments": 221, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium luteum", "strain": "strain=NBRC 112527", "accession": "GCA_008806775.1", "taxid": 2026654, "species_taxid": 2026654, "relation_to_type": "type", "validated": true, "ani": 77.6239, "matched_fragments": 204, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 77.5842, "matched_fragments": 212, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 77.5215, "matched_fragments": 218, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 77.4667, "matched_fragments": 200, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cheniae", "strain": "strain=DSM 22462", "accession": "GCA_004363695.1", "taxid": 295428, 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"matched_fragments": 1236, "total_fragments": 1237, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000419685.1", "gtdb_species": "s__Flavobacterium antarcticum", "ani": 82.1672, "matched_fragments": 629, "total_fragments": 1237, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003076455.1", "gtdb_species": "s__Flavobacterium faecale", "ani": 79.1014, "matched_fragments": 217, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "tegetincola", "DSM", "22377" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }