{ "type": "genome", "identifier": "GCF_000425645.1", "organism": "Gaetbulibacter saemankumensis DSM 17032", "title": "Gaetbulibacter saemankumensis DSM 17032", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000425645.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441528", "wgs_master": "AUDV00000000.1", "refseq_category": "reference genome", "taxid": "1121909", "species_taxid": "311208", "organism_name": "Gaetbulibacter saemankumensis DSM 17032", "infraspecific_name": "strain=DSM 17032", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/11", "asm_name": "ASM42564v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000425645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/425/645/GCF_000425645.1_ASM42564v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3089149", "genome_size_ungapped": "3088509", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "11", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000425645.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2702", "protein_coding_gene_count": "2642", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-11", "dateModified": "2013-07-11", "datePublished": "2013-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Gaetbulibacter saemankumensis DSM 17032" ], "sample_taxid": [ "1121909" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.868 MB", "sample_ph_range": { "min": 78.0, "max": 78.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3089149", "Number of Sequences": "11", "Longest Sequences (bp)": "1561765", "N50 (bp)": "1561765", "Gap Ratio (%)": "0.020718", "GCcontent (%)": "34.3", "Number of CDSs": "2642", "Average Protein Length": "349.1", "Coding Ratio (%)": "89.6", "Number of rRNAs": "5", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aestuariibaculum suncheonense", "strain": "strain=SC17", "accession": "GCA_014596935.1", "taxid": 1028745, "species_taxid": 1028745, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana haliotis", "strain": "strain=B1N29", "accession": "GCA_008806375.1", "taxid": 2614804, "species_taxid": 2614804, "relation_to_type": "type", "validated": true, "ani": 78.0703, "matched_fragments": 268, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=CGMCC 1.12213", "accession": "GCA_900141715.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 78.0691, "matched_fragments": 308, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=P7-3-5", "accession": "GCA_000283015.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 78.0519, "matched_fragments": 301, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga eckloniae", "strain": "strain=ECD14", "accession": "GCA_002886045.1", "taxid": 1803846, "species_taxid": 1803846, "relation_to_type": "type", "validated": true, "ani": 78.0174, "matched_fragments": 281, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana crocina", "strain": "strain=HST1-43", "accession": "GCA_012037625.1", "taxid": 393006, "species_taxid": 393006, "relation_to_type": "type", "validated": true, "ani": 77.9803, "matched_fragments": 226, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga rizhaonensis", "strain": "strain=RZ03", "accession": "GCA_004791695.1", "taxid": 2559571, "species_taxid": 2559571, "relation_to_type": "type", "validated": true, "ani": 77.9511, "matched_fragments": 314, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola maritimus", "strain": "strain=1505", "accession": "GCA_008056315.1", "taxid": 2591822, "species_taxid": 2591822, "relation_to_type": "type", "validated": true, "ani": 77.9079, "matched_fragments": 289, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana sedimentorum", "strain": "strain=JCM 19808", "accession": "GCA_000943565.1", "taxid": 1435349, "species_taxid": 1435349, "relation_to_type": "type", "validated": true, "ani": 77.7785, "matched_fragments": 292, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter citreus", "strain": "strain=XJNY", "accession": "GCA_002807055.1", "taxid": 2007307, "species_taxid": 2007307, "relation_to_type": "type", "validated": true, "ani": 77.7655, "matched_fragments": 244, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 77.7313, "matched_fragments": 309, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 77.6694, "matched_fragments": 173, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 77.6166, "matched_fragments": 222, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Gaetbulibacter", "saemankumensis", "DSM", "17032" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }