{ "type": "genome", "identifier": "GCF_000425685.1", "organism": "Gulosibacter molinativorax DSM 13485", "title": "Gulosibacter molinativorax DSM 13485", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000425685.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441529", "wgs_master": "AUDX00000000.1", "refseq_category": "na", "taxid": "1121934", "species_taxid": "256821", "organism_name": "Gulosibacter molinativorax DSM 13485", "infraspecific_name": "strain=DSM 13485", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/11", "asm_name": "ASM42568v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000425685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/425/685/GCF_000425685.1_ASM42568v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3379129", "genome_size_ungapped": "3378714", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "79", "contig_count": "81", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000425685.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "3172", "protein_coding_gene_count": "3068", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-11", "dateModified": "2013-07-11", "datePublished": "2013-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Gulosibacter molinativorax DSM 13485" ], "sample_taxid": [ "1121934" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Portugal" ], "sample_host_location_id": [], "data_size": "0.943 MB", "sample_ph_range": { "min": 55105.0, "max": 55105.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3379129", "Number of Sequences": "79", "Longest Sequences (bp)": "210142", "N50 (bp)": "127715", "Gap Ratio (%)": "0.012281", "GCcontent (%)": "64.3", "Number of CDSs": "3099", "Average Protein Length": "324.6", "Coding Ratio (%)": "89.3", "Number of rRNAs": "2", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gulosibacter molinativorax", "strain": "strain=DSM 13485", "accession": "GCA_000425685.1", "taxid": 256821, "species_taxid": 256821, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces marinus", "strain": "strain=DSM 26151", "accession": "GCA_021442325.1", "taxid": 1389020, "species_taxid": 1389020, "relation_to_type": "type", "validated": true, "ani": 77.3708, "matched_fragments": 188, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gryllotalpicola protaetiae", "strain": "strain=2DFW10M-5", "accession": "GCA_003627055.1", "taxid": 2419771, "species_taxid": 2419771, "relation_to_type": "type", "validated": true, "ani": 77.3538, "matched_fragments": 184, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces aurantiacus", "strain": "strain=DSM 14598", "accession": "GCA_016907355.1", "taxid": 165814, "species_taxid": 165814, "relation_to_type": "type", "validated": true, "ani": 77.2823, "matched_fragments": 236, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces intestinalis", "strain": "strain=KACC 19306", "accession": "GCA_008365295.1", "taxid": 2592652, "species_taxid": 2592652, "relation_to_type": "type", "validated": true, "ani": 77.2031, "matched_fragments": 212, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces archimandritae", "strain": "strain=G127AT", "accession": "GCA_018024495.1", "taxid": 2781962, "species_taxid": 2781962, "relation_to_type": "type", "validated": true, "ani": 76.9992, "matched_fragments": 196, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia merdavium", "strain": "strain=Sa2CUA9", "accession": "GCA_014836755.1", "taxid": 2762227, "species_taxid": 2762227, "relation_to_type": "type", "validated": true, "ani": 76.303, "matched_fragments": 143, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia rustica", "strain": 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