{ "type": "genome", "identifier": "GCF_000425705.1", "organism": "Halobacillus kuroshimensis DSM 18393", "title": "Halobacillus kuroshimensis DSM 18393", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000425705.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441195", "wgs_master": "AUDY00000000.1", "refseq_category": "reference genome", "taxid": "1121938", "species_taxid": "302481", "organism_name": "Halobacillus kuroshimensis DSM 18393", "infraspecific_name": "strain=DSM 18393", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/11", "asm_name": "ASM42570v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000425705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/425/705/GCF_000425705.1_ASM42570v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3845569", "genome_size_ungapped": "3843644", "gc_percent": "47.000000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000425705.1-RS_2024_04_26", "annotation_date": "2024-04-26", "total_gene_count": "3972", "protein_coding_gene_count": "3884", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-11", "dateModified": "2013-07-11", "datePublished": "2013-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Halobacillus kuroshimensis DSM 18393" ], "sample_taxid": [ "1121938" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "1.095 MB", "sample_ph_range": { "min": 7580.0, "max": 7580.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3845569", "Number of Sequences": "15", "Longest Sequences (bp)": "1160998", "N50 (bp)": "440086", "Gap Ratio (%)": "0.050058", "GCcontent (%)": "47.0", "Number of CDSs": "3946", "Average Protein Length": "284.7", "Coding Ratio (%)": "87.6", "Number of rRNAs": "5", "Number of tRNAs": "55", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halobacillus kuroshimensis", "strain": "strain=DSM 18393", "accession": "GCA_000425705.1", "taxid": 302481, "species_taxid": 302481, 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"status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000425705.1", "gtdb_species": "s__Halobacillus kuroshimensis", "ani": 100.0, "matched_fragments": 1273, "total_fragments": 1274, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "98.79", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_009856355.1", "gtdb_species": "s__Halobacillus litoralis_B", "ani": 87.9542, "matched_fragments": 1067, "total_fragments": 1274, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.99", "min_intra_species_ani": "98.95", 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"filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Halobacillus", "kuroshimensis", "DSM", "18393" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }