{ "type": "genome", "identifier": "GCF_000425745.1", "organism": "Pseudomonas cremoricolorata DSM 17059 = NBRC 16634", "title": "Pseudomonas cremoricolorata DSM 17059 = NBRC 16634", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000425745.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441180", "wgs_master": "AUEA00000000.1", "refseq_category": "reference genome", "taxid": "1215098", "species_taxid": "157783", "organism_name": "Pseudomonas cremoricolorata DSM 17059 = NBRC 16634", "infraspecific_name": "strain=DSM 17059", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/11", "asm_name": "ASM42574v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000425745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/425/745/GCF_000425745.1_ASM42574v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4655082", "genome_size_ungapped": "4653767", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000425745.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "4233", "protein_coding_gene_count": "4117", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-11", "dateModified": "2013-07-11", "datePublished": "2013-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas cremoricolorata DSM 17059 = NBRC 16634" ], "sample_taxid": [ "1215098" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.288 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4655082", "Number of Sequences": "26", "Longest Sequences (bp)": "561759", "N50 (bp)": "416153", "Gap Ratio (%)": "0.028249", "GCcontent (%)": "63.5", "Number of CDSs": "4141", "Average Protein Length": "333.8", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 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"status": "below_threshold" }, { "organism_name": "Pseudomonas soli", "strain": "strain=LMG 27941", "accession": "GCA_900110655.1", "taxid": 1306993, "species_taxid": 1306993, "relation_to_type": "type", "validated": true, "ani": 84.1791, "matched_fragments": 1042, "total_fragments": 1537, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_021602465.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 84.1367, "matched_fragments": 1023, "total_fragments": 1537, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_013373915.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 84.1359, "matched_fragments": 1003, "total_fragments": 1537, "ani_threshold": 95, "status": "below_threshold" }, { 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