{ "type": "genome", "identifier": "GCF_000426445.1", "organism": "Brevibacterium album DSM 18261", "title": "Brevibacterium album DSM 18261", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000426445.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440844", "wgs_master": "AUFJ00000000.1", "refseq_category": "reference genome", "taxid": "1121122", "species_taxid": "417948", "organism_name": "Brevibacterium album DSM 18261", "infraspecific_name": "strain=DSM 18261", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/09/05", "asm_name": "ASM42644v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000426445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/426/445/GCF_000426445.1_ASM42644v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4094970", "genome_size_ungapped": "4092036", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000426445.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "3631", "protein_coding_gene_count": "3536", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-09-05", "dateModified": "2013-09-05", "datePublished": "2013-09-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevibacterium album DSM 18261" ], "sample_taxid": [ "1121122" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.096 MB", "sample_ph_range": { "min": 68.0, "max": 68.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4094970", "Number of Sequences": "15", "Longest Sequences (bp)": "1026773", "N50 (bp)": "698090", "Gap Ratio (%)": "0.071649", "GCcontent (%)": "71.0", "Number of CDSs": "3598", "Average Protein Length": "343.3", "Coding Ratio (%)": "90.5", "Number of rRNAs": "6", "Number of tRNAs": "68", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevibacterium album", "strain": "strain=DSM 18261", "accession": "GCA_000426445.1", "taxid": 417948, "species_taxid": 417948, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1356, 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"below_threshold" }, { "organism_name": "Brevibacterium yomogidense", "strain": "strain=DSM 24850", "accession": "GCA_016107685.1", "taxid": 946573, "species_taxid": 946573, "relation_to_type": "type", "validated": true, "ani": 79.3085, "matched_fragments": 582, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium rongguiense", "strain": "strain=5221", "accession": "GCA_009857845.1", "taxid": 2695267, "species_taxid": 2695267, "relation_to_type": "type", "validated": true, "ani": 79.2114, "matched_fragments": 452, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium ihuae", "strain": "strain=CV3", "accession": "GCA_900184225.1", "taxid": 1631743, "species_taxid": 1631743, "relation_to_type": "type", "validated": true, "ani": 79.024, "matched_fragments": 479, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium 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"GCA_021117425.1", "taxid": 2898795, "species_taxid": 2898795, "relation_to_type": "type", "validated": true, "ani": 77.2749, "matched_fragments": 271, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 76.6771, "matched_fragments": 253, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus cauae", "strain": "strain=MKL-02", "accession": "GCA_009707125.1", "taxid": 2663847, "species_taxid": 2663847, "relation_to_type": "type", "validated": true, "ani": 76.6606, "matched_fragments": 174, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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31.0, "optimum_tmp": 37.0, "optimum_ph": 7.5, "genome_size": 4093503.0, "gc_content": 70.9, "coding_genes": 3606.375, "rRNA16S_genes": 4.0, "tRNA_genes": 48.5, "gram_stain": 1.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Brevibacterium", "album", "DSM", "18261" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }