{ "type": "genome", "identifier": "GCF_000426545.1", "organism": "Paenibacillus massiliensis subsp. panacisoli DSM 21345", "title": "Paenibacillus massiliensis subsp. panacisoli DSM 21345", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000426545.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441525", "wgs_master": "AUFO00000000.1", "refseq_category": "na", "taxid": "1122922", "species_taxid": "225917", "organism_name": "Paenibacillus massiliensis subsp. panacisoli DSM 21345", "infraspecific_name": "strain=DSM 21345", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/11", "asm_name": "ASM42654v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000426545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/426/545/GCF_000426545.1_ASM42654v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6326414", "genome_size_ungapped": "6319978", "gc_percent": "48.500000", "replicon_count": "0", "scaffold_count": "43", "contig_count": "52", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000426545.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "5629", "protein_coding_gene_count": "5450", "non_coding_gene_count": "105", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-11", "dateModified": "2013-07-11", "datePublished": "2013-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus massiliensis subsp. panacisoli DSM 21345" ], "sample_taxid": [ "1122922" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.812 MB", "sample_ph_range": { "min": 65.0, "max": 65.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6326414", "Number of Sequences": "43", "Longest Sequences (bp)": "679316", "N50 (bp)": "347963", "Gap Ratio (%)": "0.101732", "GCcontent (%)": "48.3", "Number of CDSs": "5611", "Average Protein Length": "315.7", "Coding Ratio (%)": "84.0", "Number of rRNAs": "3", "Number of tRNAs": "88", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus massiliensis subsp. panacisoli", "strain": "strain=DSM 21345", "accession": "GCA_000426545.1", 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus maysiensis", "strain": "strain=1-49", "accession": "GCA_000520815.1", "taxid": 1155954, "species_taxid": 1155954, "relation_to_type": "type", "validated": true, "ani": 77.5152, "matched_fragments": 237, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus ihbetae", "strain": "strain=IHBB 9852", "accession": "GCA_002741055.1", "taxid": 1870820, "species_taxid": 1870820, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4202, "matched_fragments": 131, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus barcinonensis", "strain": "strain=CECT 7022", "accession": "GCA_003217495.1", "taxid": 198119, "species_taxid": 198119, "relation_to_type": "type", "validated": true, "ani": 77.4067, "matched_fragments": 192, "total_fragments": 2085, "ani_threshold": 95, "status": 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