{
    "type": "genome",
    "identifier": "GCF_000426625.1",
    "organism": "Psychrilyobacter atlanticus DSM 19335",
    "title": "Psychrilyobacter atlanticus DSM 19335",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000426625.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441527",
        "wgs_master": "AUFS00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1123032",
        "species_taxid": "271091",
        "organism_name": "Psychrilyobacter atlanticus DSM 19335",
        "infraspecific_name": "strain=DSM 19335",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/11",
        "asm_name": "ASM42662v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000426625.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/426/625/GCF_000426625.1_ASM42662v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3539325",
        "genome_size_ungapped": "3530952",
        "gc_percent": "32.000000",
        "replicon_count": "0",
        "scaffold_count": "3",
        "contig_count": "5",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000426625.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "3376",
        "protein_coding_gene_count": "3267",
        "non_coding_gene_count": "92",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-11",
    "dateModified": "2013-07-11",
    "datePublished": "2013-07-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Psychrilyobacter atlanticus DSM 19335"
        ],
        "sample_taxid": [
            "1123032"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada"
        ],
        "sample_host_location_id": [],
        "data_size": "0.967 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3539325",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "2326853",
        "N50 (bp)": "2326853",
        "Gap Ratio (%)": "0.236571",
        "GCcontent (%)": "31.9",
        "Number of CDSs": "3307",
        "Average Protein Length": "304.3",
        "Coding Ratio (%)": "85.3",
        "Number of rRNAs": "22",
        "Number of tRNAs": "66",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Psychrilyobacter atlanticus",
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                "species_taxid": 271091,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1175,
                "total_fragments": 1179,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Fusobacterium varium",
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                "accession": "GCA_900637705.1",
                "taxid": 856,
                "species_taxid": 856,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8408,
                "matched_fragments": 116,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium ulcerans",
                "strain": "strain=ATCC 49185",
                "accession": "GCA_003019675.1",
                "taxid": 861,
                "species_taxid": 861,
                "relation_to_type": "type",
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                "matched_fragments": 105,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium necrogenes",
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                "accession": "GCA_900450765.1",
                "taxid": 858,
                "species_taxid": 858,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5529,
                "matched_fragments": 87,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium magnum",
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                "accession": "GCA_001623875.1",
                "taxid": 33954,
                "species_taxid": 33954,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1033,
                "matched_fragments": 61,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cetobacterium ceti",
                "strain": "strain=ATCC 700028",
                "accession": "GCA_900167275.1",
                "taxid": 180163,
                "species_taxid": 180163,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7619,
                "matched_fragments": 117,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium periodonticum",
                "strain": "strain=ATCC 33693",
                "accession": "GCA_000160475.1",
                "taxid": 860,
                "species_taxid": 860,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 75.6409,
                "matched_fragments": 76,
                "total_fragments": 1179,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cetobacterium somerae",
                "strain": "strain=ATCC BAA-474",
                "accession": "GCA_000479045.1",
                "taxid": 188913,
                "species_taxid": 188913,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5343,
                "matched_fragments": 107,
                "total_fragments": 1179,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium perfoetens",
                "strain": "strain=ATCC 29250",
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                "species_taxid": 852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5284,
                "matched_fragments": 96,
                "total_fragments": 1179,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tepidibacter formicigenes",
                "strain": "strain=DSM 15518",
                "accession": "GCA_900142235.1",
                "taxid": 227138,
                "species_taxid": 227138,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8465,
                "matched_fragments": 52,
                "total_fragments": 1179,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000426625.1",
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                "matched_fragments": 1176,
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Psychrilyobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002084825.1",
                "gtdb_species": "s__Psychrilyobacter sp002084825",
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Psychrilyobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003391055.1",
                "gtdb_species": "s__Psychrilyobacter sp003391055",
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Psychrilyobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_003973585.1",
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            },
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            },
            {
                "accession": "GCA_900764925.1",
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            },
            {
                "accession": "GCF_000622245.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": -0.302,
        "doubling_h": null,
        "growth_tmp": 18.0,
        "optimum_tmp": 18.5,
        "optimum_ph": null,
        "genome_size": 3539325.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Psychrilyobacter",
        "atlanticus",
        "DSM",
        "19335"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}