{ "type": "genome", "identifier": "GCF_000426765.1", "organism": "Vibrio litoralis DSM 17657", "title": "Vibrio litoralis DSM 17657", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000426765.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440646", "wgs_master": "AUFZ00000000.1", "refseq_category": "reference genome", "taxid": "1123493", "species_taxid": "335972", "organism_name": "Vibrio litoralis DSM 17657", "infraspecific_name": "strain=DSM 17657", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/11", "asm_name": "ASM42676v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000426765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/426/765/GCF_000426765.1_ASM42676v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3823881", "genome_size_ungapped": "3823386", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000426765.1-RS_2024_04_26", "annotation_date": "2024-04-26", "total_gene_count": "3488", "protein_coding_gene_count": "3370", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-11", "dateModified": "2013-07-11", "datePublished": "2013-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio litoralis DSM 17657" ], "sample_taxid": [ "1123493" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"total_fragments": 1264, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio algivorus", "strain": "strain=SA2", "accession": "GCA_002218005.2", "taxid": 1667024, "species_taxid": 1667024, "relation_to_type": "type", "validated": true, "ani": 88.9001, "matched_fragments": 1001, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio rumoiensis", "strain": "strain=FERM P-14531", "accession": "GCA_002218045.2", "taxid": 76258, "species_taxid": 76258, "relation_to_type": "type", "validated": true, "ani": 85.3092, "matched_fragments": 990, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio casei", "strain": "strain=DSM 22364", "accession": "GCA_002218025.2", "taxid": 673372, "species_taxid": 673372, "relation_to_type": "type", "validated": true, "ani": 82.7241, "matched_fragments": 650, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gangliei", "strain": "strain=SZDIS-1", "accession": "GCA_002934045.1", "taxid": 2077090, "species_taxid": 2077090, "relation_to_type": "type", "validated": true, "ani": 81.1887, "matched_fragments": 654, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aphrogenes", "strain": "strain=CA-1004", "accession": "GCA_002157735.2", "taxid": 1891186, "species_taxid": 1891186, "relation_to_type": "type", "validated": true, "ani": 80.6311, "matched_fragments": 591, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio algicola", "strain": "strain=SM1977", "accession": "GCA_009601765.2", "taxid": 2662262, "species_taxid": 2662262, "relation_to_type": "type", "validated": true, "ani": 79.561, "matched_fragments": 474, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio hibernica", "strain": "strain=B1.19", "accession": 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"coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Vibrio", "litoralis", "DSM", "17657" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }