{ "type": "genome", "identifier": "GCF_000427335.1", "organism": "Winogradskyella psychrotolerans RS-3", "title": "Winogradskyella psychrotolerans RS-3", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Centre for Cellular and Molecular Biology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000427335.1", "bioproject": "PRJNA224116", "biosample": "SAMN02470013", "wgs_master": "ATMR00000000.1", "refseq_category": "reference genome", "taxid": "641526", "species_taxid": "1344585", "organism_name": "Winogradskyella psychrotolerans RS-3", "infraspecific_name": "strain=RS-3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/15", "asm_name": "WiPs1.0", "asm_submitter": "Centre for Cellular and Molecular Biology", "gbrs_paired_asm": "GCA_000427335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/427/335/GCF_000427335.1_WiPs1.0", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4337031", "genome_size_ungapped": "4337031", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "219", "contig_count": "219", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-10-20", "total_gene_count": "4006", "protein_coding_gene_count": "3701", "non_coding_gene_count": "48", "pubmed_id": "23950132" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-15", "dateModified": "2013-07-15", "datePublished": "2013-07-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Winogradskyella psychrotolerans RS-3" ], "sample_taxid": [ "641526" ], 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"total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter sedimenticola", "strain": "strain=DSM 19840", "accession": "GCA_900188415.1", "taxid": 228956, "species_taxid": 228956, "relation_to_type": "type", "validated": true, "ani": 76.4083, "matched_fragments": 65, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000427335.1", "gtdb_species": "s__Winogradskyella psychrotolerans", "ani": 100.0, "matched_fragments": 1371, "total_fragments": 1374, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { 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