{
    "type": "genome",
    "identifier": "GCF_000427465.1",
    "organism": "Sinorhizobium arboris LMG 14919",
    "title": "Sinorhizobium arboris LMG 14919",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000427465.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02440592",
        "wgs_master": "ATYB00000000.1",
        "refseq_category": "reference genome",
        "taxid": "935557",
        "species_taxid": "76745",
        "organism_name": "Sinorhizobium arboris LMG 14919",
        "infraspecific_name": "strain=LMG 14919",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/15",
        "asm_name": "ASM42746v1",
        "asm_submitter": "JGI",
        "gbrs_paired_asm": "GCA_000427465.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/427/465/GCF_000427465.1_ASM42746v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6850303",
        "genome_size_ungapped": "6849603",
        "gc_percent": "62.000000",
        "replicon_count": "0",
        "scaffold_count": "7",
        "contig_count": "14",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000427465.1-RS_2024_03_15",
        "annotation_date": "2024-03-15",
        "total_gene_count": "6380",
        "protein_coding_gene_count": "6115",
        "non_coding_gene_count": "66",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-15",
    "dateModified": "2013-07-15",
    "datePublished": "2013-07-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sinorhizobium arboris LMG 14919"
        ],
        "sample_taxid": [
            "935557"
        ],
        "sample_host_organism": [
            "Prosopis chilensis"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sudan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.911 MB",
        "sample_ph_range": {
            "min": 58.0,
            "max": 58.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6850303",
        "Number of Sequences": "7",
        "Longest Sequences (bp)": "3676556",
        "N50 (bp)": "3676556",
        "Gap Ratio (%)": "0.011357",
        "GCcontent (%)": "62.0",
        "Number of CDSs": "6386",
        "Average Protein Length": "308.2",
        "Coding Ratio (%)": "86.2",
        "Number of rRNAs": "9",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Sinorhizobium arboris",
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                "relation_to_type": "type",
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                "ani": 100.0,
                "matched_fragments": 2279,
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            },
            {
                "organism_name": "Sinorhizobium meliloti",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
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                "validated": true,
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                "matched_fragments": 1669,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Sinorhizobium medicae",
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                "taxid": 110321,
                "species_taxid": 110321,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sinorhizobium medicae",
                "strain": "strain=USDA1037",
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                "species_taxid": 110321,
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                "validated": true,
                "ani": 86.0747,
                "matched_fragments": 1524,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella pollutisoli",
                "strain": "strain=KCTC 52677",
                "accession": "GCA_024609765.1",
                "taxid": 2250594,
                "species_taxid": 2250594,
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                "validated": true,
                "ani": 80.1545,
                "matched_fragments": 747,
                "total_fragments": 2280,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella curvata",
                "strain": "strain=C3",
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                "species_taxid": 1817964,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella daejeonensis",
                "strain": "strain=JCM 16236",
                "accession": "GCA_024281235.1",
                "taxid": 659017,
                "species_taxid": 659017,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3022,
                "matched_fragments": 620,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ciceribacter ferrooxidans",
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                "accession": "GCA_004137355.1",
                "taxid": 2509717,
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 605,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agrobacterium leguminum",
                "strain": "strain=MOPV5",
                "accession": "GCA_015704895.1",
                "taxid": 2792015,
                "species_taxid": 2792015,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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            "completeness": 100.0,
            "contamination": 0.0,
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        "gtdb_result": [
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                "accession": "GCF_000427465.1",
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                "total_fragments": 2280,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Sinorhizobium",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Sinorhizobium",
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            {
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
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        "doubling_h": 0.176,
        "growth_tmp": 29.0,
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        "range_salinity": 0.5,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
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        "arboris",
        "LMG",
        "14919"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}