{ "type": "genome", "identifier": "GCF_000427665.1", "organism": "Geminicoccus roseus DSM 18922", "title": "Geminicoccus roseus DSM 18922", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000427665.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441221", "wgs_master": "ATYL00000000.1", "refseq_category": "reference genome", "taxid": "1089551", "species_taxid": "404900", "organism_name": "Geminicoccus roseus DSM 18922", "infraspecific_name": "strain=DSM 18922", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/15", "asm_name": "ASM42766v1", "asm_submitter": "JGI", "gbrs_paired_asm": "GCA_000427665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/427/665/GCF_000427665.1_ASM42766v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5698370", "genome_size_ungapped": "5698270", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000427665.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "5256", "protein_coding_gene_count": "5120", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-15", "dateModified": "2013-07-15", "datePublished": "2013-07-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Geminicoccus roseus DSM 18922" ], "sample_taxid": [ "1089551" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Israel" ], "sample_host_location_id": [], "data_size": "1.537 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5698370", "Number of Sequences": "5", "Longest Sequences (bp)": "5421495", "N50 (bp)": "5421495", "Gap Ratio (%)": "0.001808", "GCcontent (%)": "68.5", "Number of CDSs": "5274", "Average Protein Length": "322.9", "Coding Ratio (%)": "89.7", "Number of rRNAs": "12", "Number of tRNAs": "61", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Geminicoccus roseus", "strain": "strain=DSM 18922", "accession": "GCA_000427665.1", "taxid": 404900, "species_taxid": 404900, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1894, "total_fragments": 1897, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Tistlia consotensis", "strain": "strain=DSM 21585", "accession": "GCA_900188055.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 76.7741, "matched_fragments": 499, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris tepida", "strain": "strain=GI", "accession": "GCA_003966715.1", "taxid": 2233851, "species_taxid": 2233851, "relation_to_type": "type", "validated": true, "ani": 76.6766, "matched_fragments": 276, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris sulfoviridis", "strain": "strain=DSM 729", "accession": "GCA_008630065.1", "taxid": 50712, "species_taxid": 50712, "relation_to_type": "type", "validated": true, "ani": 76.6752, "matched_fragments": 250, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter 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94, "species_taxid": 94, "relation_to_type": "type", "validated": true, "ani": 76.5075, "matched_fragments": 433, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter sonchi", "strain": "strain=VKM B-3145", "accession": "GCA_018390695.1", "taxid": 1937790, "species_taxid": 1937790, "relation_to_type": "type", "validated": true, "ani": 76.506, "matched_fragments": 362, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda salina", "strain": "strain=WD6-1", "accession": "GCA_003122085.1", "taxid": 2135793, "species_taxid": 2135793, "relation_to_type": "type", "validated": true, "ani": 76.4719, "matched_fragments": 177, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stella humosa", "strain": "strain=DSM 5900", "accession": "GCA_003751345.1", "taxid": 94, "species_taxid": 94, "relation_to_type": "type", "validated": true, "ani": 76.4381, "matched_fragments": 424, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium frigidaeris", "strain": "strain=JCM 32048", "accession": "GCA_022179185.1", "taxid": 2038277, "species_taxid": 2038277, "relation_to_type": "type", "validated": true, "ani": 76.3518, "matched_fragments": 420, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes elegans", "strain": "strain=DSM 11907", "accession": "GCA_003258805.1", "taxid": 29408, "species_taxid": 29408, "relation_to_type": "type", "validated": true, "ani": 76.3293, "matched_fragments": 286, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea vaviloviae", "strain": "strain=Vaf18", "accession": "GCA_001741865.1", "taxid": 1526658, "species_taxid": 1526658, "relation_to_type": "type", "validated": true, "ani": 76.3277, "matched_fragments": 271, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea psychrotolerans", "strain": "strain=1131", "accession": "GCA_002917105.1", "taxid": 1871628, "species_taxid": 1871628, "relation_to_type": "type", "validated": true, "ani": 76.3271, "matched_fragments": 269, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthobacter dioxanivorans", "strain": "strain=YN2", "accession": "GCA_016807805.1", "taxid": 2528964, "species_taxid": 2528964, "relation_to_type": "type", "validated": true, "ani": 76.3058, "matched_fragments": 287, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum moscoviense", "strain": "strain=BB-1", "accession": "GCA_001650635.1", "taxid": 1437059, "species_taxid": 1437059, "relation_to_type": "type", "validated": true, "ani": 76.2805, "matched_fragments": 239, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes roseus", "strain": "strain=DSM 5909", "accession": "GCA_003258865.1", "taxid": 29409, "species_taxid": 29409, "relation_to_type": "type", "validated": true, "ani": 76.2123, "matched_fragments": 316, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 76.167, "matched_fragments": 384, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vineibacter terrae", "strain": "strain=CC-CFT640", "accession": "GCA_008039615.1", "taxid": 2586908, "species_taxid": 2586908, "relation_to_type": "type", "validated": true, "ani": 76.1505, "matched_fragments": 434, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum kuznetsovii", "strain": 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