{
    "type": "genome",
    "identifier": "GCF_000427685.1",
    "organism": "Haloplanus natans DSM 17983",
    "title": "Haloplanus natans DSM 17983",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000427685.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02440896",
        "wgs_master": "ATYM00000000.1",
        "refseq_category": "reference genome",
        "taxid": "926690",
        "species_taxid": "376171",
        "organism_name": "Haloplanus natans DSM 17983",
        "infraspecific_name": "strain=DSM 17983",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/15",
        "asm_name": "ASM42768v1",
        "asm_submitter": "JGI",
        "gbrs_paired_asm": "GCA_000427685.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/427/685/GCF_000427685.1_ASM42768v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "3797935",
        "genome_size_ungapped": "3797735",
        "gc_percent": "65.000000",
        "replicon_count": "0",
        "scaffold_count": "8",
        "contig_count": "10",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000427685.1-RS_2024_10_21",
        "annotation_date": "2024-10-21",
        "total_gene_count": "4001",
        "protein_coding_gene_count": "3831",
        "non_coding_gene_count": "67",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-15",
    "dateModified": "2013-07-15",
    "datePublished": "2013-07-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Haloplanus natans DSM 17983"
        ],
        "sample_taxid": [
            "926690"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Israel"
        ],
        "sample_host_location_id": [],
        "data_size": "1.039 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3797935",
        "Number of Sequences": "8",
        "Longest Sequences (bp)": "3270840",
        "N50 (bp)": "3270840",
        "Gap Ratio (%)": "0.005266",
        "GCcontent (%)": "65.0",
        "Number of CDSs": "3919",
        "Average Protein Length": "280.3",
        "Coding Ratio (%)": "86.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Haloplanus natans",
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                "accession": "GCA_000427685.1",
                "taxid": 376171,
                "species_taxid": 376171,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1261,
                "total_fragments": 1262,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Haloplanus rubicundus",
                "strain": "strain=CBA1112",
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                "taxid": 1547898,
                "species_taxid": 1547898,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 865,
                "total_fragments": 1262,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloplanus salinus",
                "strain": "strain=JCM 18368",
                "accession": "GCA_003336245.1",
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                "species_taxid": 1126245,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloplanus aerogenes",
                "strain": "strain=CGMCC 1.10124",
                "accession": "GCA_003688715.1",
                "taxid": 660522,
                "species_taxid": 660522,
                "relation_to_type": "type",
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                "ani": 85.7008,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloplanus aerogenes",
                "strain": "strain=JCM 16430",
                "accession": "GCA_003856835.1",
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                "species_taxid": 660522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6791,
                "matched_fragments": 792,
                "total_fragments": 1262,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000427685.1",
                "gtdb_species": "s__Haloplanus natans",
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                "matched_fragments": 1262,
                "total_fragments": 1262,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloplanus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            {
                "accession": "GCF_003342675.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloplanus",
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                "mean_intra_species_ani": "98.71",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003336245.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloplanus",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003856835.1",
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                "min_intra_species_af": "1.00",
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                "status": "-"
            },
            {
                "accession": "GCF_009762275.1",
                "gtdb_species": "s__Haloplanus rallus",
                "ani": 83.9784,
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                "total_fragments": 1262,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloplanus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_900107665.1",
                "gtdb_species": "s__Haloplanus vescus",
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                "matched_fragments": 649,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloplanus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
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        "cell_diameter": 0.301,
        "cell_length": 0.397,
        "doubling_h": null,
        "growth_tmp": 37.0,
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        "optimum_ph": 6.25,
        "genome_size": 3797935.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
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        "natans",
        "DSM",
        "17983"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}