{
    "type": "genome",
    "identifier": "GCF_000427965.1",
    "organism": "Olivibacter sitiensis DSM 17696",
    "title": "Olivibacter sitiensis DSM 17696",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000427965.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02440601",
        "wgs_master": "ATZA00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1122621",
        "species_taxid": "376470",
        "organism_name": "Olivibacter sitiensis DSM 17696",
        "infraspecific_name": "strain=DSM 17696",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/09/05",
        "asm_name": "ASM42796v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000427965.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/427/965/GCF_000427965.1_ASM42796v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5053571",
        "genome_size_ungapped": "5051470",
        "gc_percent": "44.500000",
        "replicon_count": "0",
        "scaffold_count": "110",
        "contig_count": "112",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000427965.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "4443",
        "protein_coding_gene_count": "4341",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-09-05",
    "dateModified": "2013-09-05",
    "datePublished": "2013-09-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Olivibacter sitiensis DSM 17696"
        ],
        "sample_taxid": [
            "1122621"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Greece"
        ],
        "sample_host_location_id": [],
        "data_size": "1.450 MB",
        "sample_ph_range": {
            "min": 68.0,
            "max": 68.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5053571",
        "Number of Sequences": "110",
        "Longest Sequences (bp)": "256271",
        "N50 (bp)": "86967",
        "Gap Ratio (%)": "0.042228",
        "GCcontent (%)": "44.6",
        "Number of CDSs": "4224",
        "Average Protein Length": "347.8",
        "Coding Ratio (%)": "87.2",
        "Number of rRNAs": "4",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Olivibacter sitiensis",
                "strain": "strain=DSM 17696",
                "accession": "GCA_000427965.1",
                "taxid": 376470,
                "species_taxid": 376470,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1621,
                "total_fragments": 1629,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sphingobacterium lactis",
                "strain": "strain=DSM 22361",
                "accession": "GCA_011046555.1",
                "taxid": 797291,
                "species_taxid": 797291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3487,
                "matched_fragments": 50,
                "total_fragments": 1629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobacterium lactis",
                "strain": "strain=DSM 22361",
                "accession": "GCA_900107985.1",
                "taxid": 797291,
                "species_taxid": 797291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1786,
                "matched_fragments": 53,
                "total_fragments": 1629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Olivibacter domesticus",
                "strain": "strain=DSM 18733",
                "accession": "GCA_900109575.1",
                "taxid": 407022,
                "species_taxid": 407022,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9253,
                "matched_fragments": 85,
                "total_fragments": 1629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parapedobacter luteus",
                "strain": "strain=DSM 22899",
                "accession": "GCA_900168055.1",
                "taxid": 623280,
                "species_taxid": 623280,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7082,
                "matched_fragments": 60,
                "total_fragments": 1629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parapedobacter koreensis",
                "strain": "strain=Jip14",
                "accession": "GCA_900109365.1",
                "taxid": 332977,
                "species_taxid": 332977,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5368,
                "matched_fragments": 83,
                "total_fragments": 1629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parapedobacter indicus",
                "strain": "strain=RK1",
                "accession": "GCA_002934635.1",
                "taxid": 1477437,
                "species_taxid": 1477437,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2441,
                "matched_fragments": 58,
                "total_fragments": 1629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parapedobacter indicus",
                "strain": "strain=RK1",
                "accession": "GCA_900113765.1",
                "taxid": 1477437,
                "species_taxid": 1477437,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1825,
                "matched_fragments": 60,
                "total_fragments": 1629,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000427965.1",
                "gtdb_species": "s__Olivibacter sitiensis",
                "ani": 100.0,
                "matched_fragments": 1621,
                "total_fragments": 1629,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Olivibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004368405.1",
                "gtdb_species": "s__Pseudosphingobacterium sp004368405",
                "ani": 78.8625,
                "matched_fragments": 109,
                "total_fragments": 1629,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pseudosphingobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011046555.1",
                "gtdb_species": "s__Sphingobacterium lactis",
                "ani": 78.2414,
                "matched_fragments": 51,
                "total_fragments": 1629,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Sphingobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014334135.1",
                "gtdb_species": "s__Pseudosphingobacterium sp014334135",
                "ani": 77.3622,
                "matched_fragments": 102,
                "total_fragments": 1629,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pseudosphingobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000192845.1",
                "gtdb_species": "s__Pseudosphingobacterium jilunii",
                "ani": 77.3327,
                "matched_fragments": 96,
                "total_fragments": 1629,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pseudosphingobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.40",
                "min_intra_species_ani": "98.36",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_011030405.1",
                "gtdb_species": "s__Sphingobacterium sp011030405",
                "ani": 77.1963,
                "matched_fragments": 57,
                "total_fragments": 1629,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Sphingobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900109575.1",
                "gtdb_species": "s__Pseudosphingobacterium domesticum",
                "ani": 76.8972,
                "matched_fragments": 84,
                "total_fragments": 1629,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pseudosphingobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900168055.1",
                "gtdb_species": "s__Parapedobacter luteus",
                "ani": 76.7046,
                "matched_fragments": 59,
                "total_fragments": 1629,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Parapedobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.02",
                "min_intra_species_ani": "99.02",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900113765.1",
                "gtdb_species": "s__Parapedobacter indicus",
                "ani": 76.1723,
                "matched_fragments": 59,
                "total_fragments": 1629,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Parapedobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004364125.1",
                "gtdb_species": "s__Sphingobacterium paludis",
                "ani": 76.0254,
                "matched_fragments": 50,
                "total_fragments": 1629,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Sphingobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.167,
        "cell_length": 0.129,
        "doubling_h": null,
        "growth_tmp": 29.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 6.5,
        "genome_size": 5055457.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Olivibacter",
        "sitiensis",
        "DSM",
        "17696"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}