{
    "type": "genome",
    "identifier": "GCF_000428065.1",
    "organism": "Shimazuella kribbensis DSM 45090",
    "title": "Shimazuella kribbensis DSM 45090",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000428065.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441224",
        "wgs_master": "ATZF00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1123252",
        "species_taxid": "139808",
        "organism_name": "Shimazuella kribbensis DSM 45090",
        "infraspecific_name": "strain=DSM 45090",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/09/05",
        "asm_name": "ASM42806v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000428065.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/428/065/GCF_000428065.1_ASM42806v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4185101",
        "genome_size_ungapped": "4179157",
        "gc_percent": "38.500000",
        "replicon_count": "0",
        "scaffold_count": "42",
        "contig_count": "46",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000428065.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "4304",
        "protein_coding_gene_count": "4132",
        "non_coding_gene_count": "77",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-09-05",
    "dateModified": "2013-09-05",
    "datePublished": "2013-09-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Shimazuella kribbensis DSM 45090"
        ],
        "sample_taxid": [
            "1123252"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Korea"
        ],
        "sample_host_location_id": [],
        "data_size": "1.186 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4185101",
        "Number of Sequences": "42",
        "Longest Sequences (bp)": "606309",
        "N50 (bp)": "244454",
        "Gap Ratio (%)": "0.143031",
        "GCcontent (%)": "38.4",
        "Number of CDSs": "4333",
        "Average Protein Length": "257.7",
        "Coding Ratio (%)": "80.0",
        "Number of rRNAs": "4",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Shimazuella kribbensis",
                "strain": "strain=DSM 45090",
                "accession": "GCA_000428065.1",
                "taxid": 139808,
                "species_taxid": 139808,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1367,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Shimazuella alba",
                "strain": "strain=KC615",
                "accession": "GCA_009831235.1",
                "taxid": 2690964,
                "species_taxid": 2690964,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2155,
                "matched_fragments": 548,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000428065.1",
                "gtdb_species": "s__Shimazuella kribbensis",
                "ani": 100.0,
                "matched_fragments": 1367,
                "total_fragments": 1374,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Thermoactinomycetales;f__Thermoactinomycetaceae;g__Shimazuella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009831235.1",
                "gtdb_species": "s__Shimazuella sp009831235",
                "ani": 80.2046,
                "matched_fragments": 548,
                "total_fragments": 1374,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Thermoactinomycetales;f__Thermoactinomycetaceae;g__Shimazuella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 32.0,
        "optimum_ph": null,
        "genome_size": 4187023.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Shimazuella",
        "kribbensis",
        "DSM",
        "45090"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}