{ "type": "genome", "identifier": "GCF_000428145.1", "organism": "Chitinilyticum litopenaei DSM 21440", "title": "Chitinilyticum litopenaei DSM 21440", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000428145.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441212", "wgs_master": "ATZJ00000000.1", "refseq_category": "reference genome", "taxid": "529086", "species_taxid": "1121276", "organism_name": "Chitinilyticum litopenaei DSM 21440", "infraspecific_name": "strain=DSM 21440", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/15", "asm_name": "ASM42814v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000428145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/428/145/GCF_000428145.1_ASM42814v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3968450", "genome_size_ungapped": "3964900", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "86", "contig_count": "91", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000428145.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3726", "protein_coding_gene_count": "3618", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-15", "dateModified": "2013-07-15", "datePublished": "2013-07-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Chitinilyticum litopenaei DSM 21440" ], "sample_taxid": [ "529086" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "1.102 MB", "sample_ph_range": { "min": 711.0, "max": 711.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.62, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3968450", "Number of Sequences": "86", "Longest Sequences (bp)": "406285", "N50 (bp)": "77354", "Gap Ratio (%)": "0.089456", "GCcontent (%)": "62.6", "Number of CDSs": "3553", "Average Protein Length": "319.9", "Coding Ratio (%)": "85.9", "Number of rRNAs": "0", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chitinilyticum litopenaei", "strain": "strain=DSM 21440", "accession": "GCA_000428145.1", "taxid": 1121276, "species_taxid": 1121276, 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