{
    "type": "genome",
    "identifier": "GCF_000428645.1",
    "organism": "Mycoplasmoides gallisepticum ATCC 19610",
    "title": "Mycoplasmoides gallisepticum ATCC 19610",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000428645.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441218",
        "wgs_master": "AUAI00000000.1",
        "refseq_category": "na",
        "taxid": "1267002",
        "species_taxid": "2096",
        "organism_name": "Mycoplasmoides gallisepticum ATCC 19610",
        "infraspecific_name": "strain=ATCC 19610",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/15",
        "asm_name": "ASM42864v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000428645.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/428/645/GCF_000428645.1_ASM42864v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "920684",
        "genome_size_ungapped": "919671",
        "gc_percent": "31.500000",
        "replicon_count": "0",
        "scaffold_count": "32",
        "contig_count": "33",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-26",
        "total_gene_count": "786",
        "protein_coding_gene_count": "702",
        "non_coding_gene_count": "44",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-15",
    "dateModified": "2013-07-15",
    "datePublished": "2013-07-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mycoplasmoides gallisepticum ATCC 19610"
        ],
        "sample_taxid": [
            "1267002"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.254 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "920684",
        "Number of Sequences": "32",
        "Longest Sequences (bp)": "122416",
        "N50 (bp)": "49980",
        "Gap Ratio (%)": "0.110027",
        "GCcontent (%)": "31.4",
        "Number of CDSs": "1318",
        "Average Protein Length": "158.6",
        "Coding Ratio (%)": "68.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "32",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Mycoplasmoides gallisepticum",
                "strain": "strain=ATCC 19610",
                "accession": "GCA_000428645.1",
                "taxid": 2096,
                "species_taxid": 2096,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 288,
                "total_fragments": 290,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mycoplasmoides gallisepticum",
                "strain": "strain=NCTC10115",
                "accession": "GCA_900476085.1",
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                "species_taxid": 2096,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9765,
                "matched_fragments": 290,
                "total_fragments": 290,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mycoplasma imitans",
                "strain": "strain=ATCC 51306",
                "accession": "GCA_000518305.1",
                "taxid": 29560,
                "species_taxid": 29560,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3693,
                "matched_fragments": 237,
                "total_fragments": 290,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900476085.1",
                "gtdb_species": "s__Mycoplasmoides gallisepticum",
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                "matched_fragments": 290,
                "total_fragments": 290,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Mycoplasmoides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.49",
                "min_intra_species_ani": "97.87",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 28,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014068355.1",
                "gtdb_species": "s__Mycoplasmoides tullyi",
                "ani": 86.9425,
                "matched_fragments": 235,
                "total_fragments": 290,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Mycoplasmoides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000518305.1",
                "gtdb_species": "s__Mycoplasmoides imitans",
                "ani": 84.383,
                "matched_fragments": 235,
                "total_fragments": 290,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Mycoplasmoides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Mycoplasmoides",
        "gallisepticum",
        "ATCC",
        "19610"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}