{
    "type": "genome",
    "identifier": "GCF_000428665.1",
    "organism": "Xylella fastidiosa subsp. multiplex ATCC 35871",
    "title": "Xylella fastidiosa subsp. multiplex ATCC 35871",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000428665.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441559",
        "wgs_master": "AUAJ00000000.1",
        "refseq_category": "na",
        "taxid": "1267006",
        "species_taxid": "2371",
        "organism_name": "Xylella fastidiosa subsp. multiplex ATCC 35871",
        "infraspecific_name": "strain=ATCC 35871",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/15",
        "asm_name": "ASM42866v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000428665.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/428/665/GCF_000428665.1_ASM42866v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2416255",
        "genome_size_ungapped": "2413091",
        "gc_percent": "51.500000",
        "replicon_count": "0",
        "scaffold_count": "58",
        "contig_count": "62",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000428665.1-RS_2024_05_12",
        "annotation_date": "2024-05-12",
        "total_gene_count": "2165",
        "protein_coding_gene_count": "2014",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-15",
    "dateModified": "2013-07-15",
    "datePublished": "2013-07-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Xylella fastidiosa subsp. multiplex ATCC 35871"
        ],
        "sample_taxid": [
            "1267006"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.692 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2416255",
        "Number of Sequences": "58",
        "Longest Sequences (bp)": "252088",
        "N50 (bp)": "106692",
        "Gap Ratio (%)": "0.130946",
        "GCcontent (%)": "51.7",
        "Number of CDSs": "2028",
        "Average Protein Length": "301.3",
        "Coding Ratio (%)": "75.9",
        "Number of rRNAs": "6",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Xylella fastidiosa subsp. multiplex",
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                "accession": "GCA_000428665.1",
                "taxid": 644357,
                "species_taxid": 2371,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 770,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Xylella fastidiosa",
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                "accession": "GCA_000767565.1",
                "taxid": 2371,
                "species_taxid": 2371,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.0177,
                "matched_fragments": 741,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
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                "accession": "GCA_011801475.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_900129695.1",
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                "status": "conclusive"
            },
            {
                "organism_name": "Xylella taiwanensis",
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                "species_taxid": 1444770,
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                "ani": 83.0131,
                "matched_fragments": 638,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas translucens",
                "strain": "strain=ATCC 19319",
                "accession": "GCA_020880735.1",
                "taxid": 343,
                "species_taxid": 343,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5249,
                "matched_fragments": 59,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_011801475.1",
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            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_905142465.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas",
                "ani_circumscription_radius": 95.1927,
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            },
            {
                "accession": "GCF_009832905.1",
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            {
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.699,
        "cell_length": null,
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        "growth_tmp": 27.633,
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        "coding_genes": 2296.16,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
        "Xylella",
        "fastidiosa",
        "subsp.",
        "multiplex",
        "ATCC",
        "35871"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}