{ "type": "genome", "identifier": "GCF_000428845.1", "organism": "Dyadobacter alkalitolerans DSM 23607", "title": "Dyadobacter alkalitolerans DSM 23607", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000428845.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440874", "wgs_master": "AUAS00000000.1", "refseq_category": "reference genome", "taxid": "1121481", "species_taxid": "492736", "organism_name": "Dyadobacter alkalitolerans DSM 23607", "infraspecific_name": "strain=DSM 23607", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/15", "asm_name": "ASM42884v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000428845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/428/845/GCF_000428845.1_ASM42884v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6287614", "genome_size_ungapped": "6285169", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "50", "contig_count": "51", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000428845.1-RS_2024_09_16", "annotation_date": "2024-09-16", "total_gene_count": "5465", "protein_coding_gene_count": "5383", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-15", "dateModified": "2013-07-15", "datePublished": "2013-07-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Dyadobacter alkalitolerans DSM 23607" ], "sample_taxid": [ "1121481" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.791 MB", "sample_ph_range": { "min": 512.0, "max": 512.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6287614", "Number of Sequences": "50", "Longest Sequences (bp)": "727897", "N50 (bp)": "423870", "Gap Ratio (%)": "0.038886", "GCcontent (%)": "45.7", "Number of CDSs": "5292", "Average Protein Length": "352.7", "Coding Ratio (%)": "89.1", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dyadobacter alkalitolerans", "strain": "strain=DSM 23607", "accession": "GCA_000428845.1", "taxid": 492736, "species_taxid": 492736, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter flavalbus", "strain": "strain=NS28", "accession": "GCA_006149045.1", "taxid": 2579942, "species_taxid": 2579942, "relation_to_type": "type", "validated": true, "ani": 78.223, "matched_fragments": 620, "total_fragments": 2073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter arcticus", "strain": "strain=DSM 102865", "accession": "GCA_011762185.1", "taxid": 1078754, "species_taxid": 1078754, "relation_to_type": "type", "validated": true, "ani": 78.165, "matched_fragments": 542, "total_fragments": 2073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter fermentans", "strain": "strain=DSM 18053", "accession": "GCA_000023125.1", "taxid": 94254, "species_taxid": 94254, "relation_to_type": "type", "validated": true, "ani": 78.0086, "matched_fragments": 596, "total_fragments": 2073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter psychrotolerans", "strain": "strain=AR-3-6", "accession": "GCA_004349265.1", "taxid": 2541721, "species_taxid": 2541721, "relation_to_type": "type", "validated": true, "ani": 77.8776, "matched_fragments": 382, "total_fragments": 2073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter frigoris", "strain": "strain=AR-3-8", "accession": "GCA_005280585.1", "taxid": 2576211, "species_taxid": 2576211, "relation_to_type": "type", "validated": true, "ani": 77.5434, "matched_fragments": 334, "total_fragments": 2073, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000428845.1", "gtdb_species": "s__Dyadobacter alkalitolerans", "ani": 100.0, "matched_fragments": 2070, "total_fragments": 2073, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Dyadobacter", "alkalitolerans", "DSM", "23607" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }