{
    "type": "genome",
    "identifier": "GCF_000428925.1",
    "organism": "Furfurilactobacillus rossiae DSM 15814",
    "title": "Furfurilactobacillus rossiae DSM 15814",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000428925.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441207",
        "wgs_master": "AUAW00000000.1",
        "refseq_category": "na",
        "taxid": "1114972",
        "species_taxid": "231049",
        "organism_name": "Furfurilactobacillus rossiae DSM 15814",
        "infraspecific_name": "strain=DSM 15814",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/15",
        "asm_name": "ASM42892v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000428925.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/428/925/GCF_000428925.1_ASM42892v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2862294",
        "genome_size_ungapped": "2861815",
        "gc_percent": "43.500000",
        "replicon_count": "0",
        "scaffold_count": "39",
        "contig_count": "40",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000428925.1-RS_2024_11_18",
        "annotation_date": "2024-11-18",
        "total_gene_count": "2772",
        "protein_coding_gene_count": "2653",
        "non_coding_gene_count": "74",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-15",
    "dateModified": "2013-07-15",
    "datePublished": "2013-07-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Furfurilactobacillus rossiae DSM 15814"
        ],
        "sample_taxid": [
            "1114972"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Italy"
        ],
        "sample_host_location_id": [],
        "data_size": "0.819 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2862294",
        "Number of Sequences": "39",
        "Longest Sequences (bp)": "528281",
        "N50 (bp)": "128953",
        "Gap Ratio (%)": "0.016735",
        "GCcontent (%)": "43.3",
        "Number of CDSs": "2687",
        "Average Protein Length": "301.3",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "5",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Furfurilactobacillus rossiae",
                "strain": "strain=DSM 15814",
                "accession": "GCA_000428925.1",
                "taxid": 231049,
                "species_taxid": 231049,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 933,
                "total_fragments": 938,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Furfurilactobacillus rossiae",
                "strain": "strain=DSM 15814",
                "accession": "GCA_000277855.1",
                "taxid": 231049,
                "species_taxid": 231049,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9838,
                "matched_fragments": 918,
                "total_fragments": 938,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Furfurilactobacillus rossiae",
                "strain": "strain=DSM 15814",
                "accession": "GCA_001435135.1",
                "taxid": 231049,
                "species_taxid": 231049,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9653,
                "matched_fragments": 912,
                "total_fragments": 938,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Furfurilactobacillus milii",
                "strain": "strain=FUA3430",
                "accession": "GCA_021654115.1",
                "taxid": 2888272,
                "species_taxid": 2888272,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.0307,
                "matched_fragments": 767,
                "total_fragments": 938,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Furfurilactobacillus siliginis",
                "strain": "strain=DSM 22696",
                "accession": "GCA_001437435.1",
                "taxid": 348151,
                "species_taxid": 348151,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4461,
                "matched_fragments": 183,
                "total_fragments": 938,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Levilactobacillus suantsaiihabitans",
                "strain": "strain=BCRC 81129",
                "accession": "GCA_004745505.1",
                "taxid": 2487722,
                "species_taxid": 2487722,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3506,
                "matched_fragments": 50,
                "total_fragments": 938,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000428925.1",
                "gtdb_species": "s__Furfurilactobacillus rossiae",
                "ani": 100.0,
                "matched_fragments": 933,
                "total_fragments": 938,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Furfurilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.59",
                "min_intra_species_ani": "97.96",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009864005.1",
                "gtdb_species": "s__Furfurilactobacillus rossiae_B",
                "ani": 92.9308,
                "matched_fragments": 766,
                "total_fragments": 938,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Furfurilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013394045.1",
                "gtdb_species": "s__Furfurilactobacillus rossiae_A",
                "ani": 92.8622,
                "matched_fragments": 741,
                "total_fragments": 938,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Furfurilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.68",
                "min_intra_species_ani": "95.37",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_003482405.1",
                "gtdb_species": "s__Furfurilactobacillus sp003482405",
                "ani": 81.2631,
                "matched_fragments": 320,
                "total_fragments": 938,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Furfurilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.38",
                "min_intra_species_ani": "99.38",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001437435.1",
                "gtdb_species": "s__Furfurilactobacillus siliginis",
                "ani": 79.4461,
                "matched_fragments": 183,
                "total_fragments": 938,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Furfurilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004745505.1",
                "gtdb_species": "s__Levilactobacillus suantsaiihabitans",
                "ani": 77.3506,
                "matched_fragments": 50,
                "total_fragments": 938,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Levilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Furfurilactobacillus",
        "rossiae",
        "DSM",
        "15814"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}