{ "type": "genome", "identifier": "GCF_000428985.1", "organism": "Marinobacterium litorale DSM 23545", "title": "Marinobacterium litorale DSM 23545", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000428985.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440877", "wgs_master": "AUAZ00000000.1", "refseq_category": "reference genome", "taxid": "1122201", "species_taxid": "404770", "organism_name": "Marinobacterium litorale DSM 23545", "infraspecific_name": "strain=DSM 23545", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/15", "asm_name": "ASM42898v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000428985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/428/985/GCF_000428985.1_ASM42898v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4380400", "genome_size_ungapped": "4378162", "gc_percent": "56.500000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "68", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000428985.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "4250", "protein_coding_gene_count": "4138", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-15", "dateModified": "2013-07-15", "datePublished": "2013-07-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacterium litorale DSM 23545" ], "sample_taxid": [ "1122201" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.251 MB", "sample_ph_range": { "min": 512.0, "max": 512.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4380400", "Number of Sequences": "64", "Longest Sequences (bp)": "326318", "N50 (bp)": "137897", "Gap Ratio (%)": "0.051091", "GCcontent (%)": "56.4", "Number of CDSs": "4167", "Average Protein Length": "317.8", "Coding Ratio (%)": "90.7", "Number of rRNAs": "3", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacterium litorale", "strain": "strain=DSM 23545", "accession": "GCA_000428985.1", "taxid": 404770, "species_taxid": 404770, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1418, "total_fragments": 1424, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacterium lutimaris", "strain": "strain=DSM 22012", "accession": "GCA_900108065.1", "taxid": 568106, "species_taxid": 568106, "relation_to_type": "type", "validated": true, "ani": 80.1172, "matched_fragments": 506, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium mangrovicola", "strain": "strain=DSM 27697", "accession": "GCA_004339595.1", "taxid": 1476959, "species_taxid": 1476959, "relation_to_type": "type", "validated": true, "ani": 80.0683, "matched_fragments": 507, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium zhoushanense", "strain": "strain=CGMCC 1.15341", "accession": "GCA_014641945.1", "taxid": 1679163, "species_taxid": 1679163, "relation_to_type": "type", "validated": true, "ani": 79.7377, "matched_fragments": 474, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium ramblicola", "strain": "strain=D7", "accession": "GCA_019084545.1", "taxid": 2849041, "species_taxid": 2849041, "relation_to_type": "type", "validated": true, "ani": 79.528, "matched_fragments": 510, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium stanieri", "strain": "strain=DSM 7027", "accession": "GCA_900155945.1", "taxid": 49186, "species_taxid": 49186, "relation_to_type": "type", "validated": true, "ani": 78.727, "matched_fragments": 289, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium georgiense", "strain": "strain=DSM 11526", "accession": "GCA_900107855.1", "taxid": 48076, "species_taxid": 48076, "relation_to_type": "type", "validated": true, "ani": 78.5617, "matched_fragments": 249, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium arenosum", "strain": "strain=CAU 1594", "accession": "GCA_019795155.1", "taxid": 2862496, "species_taxid": 2862496, "relation_to_type": "type", "validated": true, "ani": 78.0532, "matched_fragments": 246, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium rhizophilum", "strain": "strain=DSM 18822", "accession": "GCA_000378045.1", "taxid": 420402, "species_taxid": 420402, "relation_to_type": "type", "validated": true, "ani": 77.7157, "matched_fragments": 199, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium profundum", "strain": "strain=PAMC 27536", "accession": "GCA_001528745.1", "taxid": 1714300, "species_taxid": 1714300, "relation_to_type": "type", "validated": true, "ani": 77.6322, "matched_fragments": 200, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium aestuarii", "strain": "strain=ST58-10", "accession": "GCA_001651805.1", "taxid": 1821621, "species_taxid": 1821621, "relation_to_type": "type", "validated": true, "ani": 77.5823, "matched_fragments": 202, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas tianxiuensis", "strain": "strain=BC-M4-5", "accession": "GCA_009834345.1", "taxid": 2497861, "species_taxid": 2497861, "relation_to_type": "type", "validated": true, "ani": 76.506, "matched_fragments": 86, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000428985.1", "gtdb_species": "s__Marinobacterium litorale", "ani": 100.0, "matched_fragments": 1418, "total_fragments": 1424, "gtdb_taxonomy": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Marinobacterium", "litorale", "DSM", "23545" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }