{ "type": "genome", "identifier": "GCF_000429025.1", "organism": "Pseudonocardia spinosispora DSM 44797", "title": "Pseudonocardia spinosispora DSM 44797", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000429025.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441208", "wgs_master": "AUBB00000000.1", "refseq_category": "reference genome", "taxid": "1123025", "species_taxid": "103441", "organism_name": "Pseudonocardia spinosispora DSM 44797", "infraspecific_name": "strain=DSM 44797", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/09/05", "asm_name": "ASM42902v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000429025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/429/025/GCF_000429025.1_ASM42902v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9537556", "genome_size_ungapped": "9532942", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "73", "contig_count": "85", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000429025.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "8644", "protein_coding_gene_count": "8483", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-09-05", "dateModified": "2013-09-05", "datePublished": "2013-09-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudonocardia spinosispora DSM 44797" ], "sample_taxid": [ "1123025" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "2.580 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9537556", "Number of Sequences": "73", "Longest Sequences (bp)": "1189770", "N50 (bp)": "358747", "Gap Ratio (%)": "0.048377", "GCcontent (%)": "69.4", "Number of CDSs": "8666", "Average Protein Length": "320.5", "Coding Ratio (%)": "87.4", "Number of rRNAs": "3", "Number of tRNAs": "83", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudonocardia spinosispora", "strain": "strain=DSM 44797", "accession": "GCA_000429025.1", "taxid": 103441, "species_taxid": 103441, 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78.5474, "matched_fragments": 886, "total_fragments": 3142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia hydrocarbonoxydans", "strain": "strain=NBRC 14498", "accession": "GCA_006539565.1", "taxid": 76726, "species_taxid": 76726, "relation_to_type": "type", "validated": true, "ani": 78.3132, "matched_fragments": 757, "total_fragments": 3142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia abyssalis", "strain": "strain=KRD168", "accession": "GCA_019263705.2", "taxid": 2792008, "species_taxid": 2792008, "relation_to_type": "type", "validated": true, "ani": 78.1133, "matched_fragments": 802, "total_fragments": 3142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia nigra", "strain": "strain=DSM 104088", "accession": "GCA_019396355.1", "taxid": 1921578, "species_taxid": 1921578, "relation_to_type": "type", "validated": true, "ani": 78.0712, "matched_fragments": 861, "total_fragments": 3142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia petroleophila", "strain": "strain=CGMCC 4.1532", "accession": "GCA_014235185.1", "taxid": 37331, "species_taxid": 37331, "relation_to_type": "type", "validated": true, "ani": 78.0202, "matched_fragments": 863, "total_fragments": 3142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia xinjiangensis", "strain": "strain=JCM 11839", "accession": "GCA_012911925.1", "taxid": 75289, "species_taxid": 75289, "relation_to_type": "type", "validated": true, "ani": 77.9427, "matched_fragments": 828, "total_fragments": 3142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia broussonetiae", "strain": "strain=Gen 01", "accession": "GCA_013155125.1", "taxid": 2736640, "species_taxid": 2736640, "relation_to_type": "type", "validated": true, "ani": 77.7928, "matched_fragments": 925, "total_fragments": 3142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora globicatena", "strain": "strain=DSM 44256", "accession": "GCA_024171945.1", "taxid": 103729, "species_taxid": 103729, "relation_to_type": "type", "validated": true, "ani": 77.3809, "matched_fragments": 640, "total_fragments": 3142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora diospyrosa", "strain": "strain=DSM 44255", "accession": "GCA_024171925.1", "taxid": 103728, "species_taxid": 103728, "relation_to_type": "type", "validated": true, "ani": 77.3647, "matched_fragments": 642, "total_fragments": 3142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora terrae", "strain": "strain=16K309", "accession": "GCA_004348435.1", "taxid": 2530384, "species_taxid": 2530384, "relation_to_type": "type", "validated": true, "ani": 77.2434, "matched_fragments": 655, "total_fragments": 3142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora cianjurensis", "strain": "strain=DSM 45657", "accession": "GCA_003663795.1", "taxid": 585224, "species_taxid": 585224, "relation_to_type": "type", "validated": true, "ani": 77.2317, "matched_fragments": 680, "total_fragments": 3142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora rhizosphaerae", "strain": "strain=H219", "accession": "GCA_003931915.1", "taxid": 2492662, "species_taxid": 2492662, "relation_to_type": "type", "validated": true, "ani": 77.2031, "matched_fragments": 623, "total_fragments": 3142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptoalloteichus hindustanus", "strain": "strain=DSM 44523", "accession": "GCA_900129375.1", "taxid": 2017, "species_taxid": 2017, "relation_to_type": "type", "validated": true, "ani": 77.0921, "matched_fragments": 651, "total_fragments": 3142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinophytocola xinjiangensis", "strain": "strain=CGMCC 4.4663", "accession": "GCA_001921215.1", "taxid": 485602, "species_taxid": 485602, "relation_to_type": "type", "validated": true, "ani": 76.9171, "matched_fragments": 827, "total_fragments": 3142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix syringae", "strain": "strain=NRRL B-16468", "accession": "GCA_009498035.1", "taxid": 103733, "species_taxid": 103733, "relation_to_type": "type", "validated": true, "ani": 76.8617, "matched_fragments": 881, "total_fragments": 3142, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000429025.1", "gtdb_species": "s__Pseudonocardia spinosispora", "ani": 100.0, "matched_fragments": 3136, "total_fragments": 3142, "gtdb_taxonomy": 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