{ "type": "genome", "identifier": "GCF_000429205.1", "organism": "Actinotignum schaalii DSM 15541", "title": "Actinotignum schaalii DSM 15541", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000429205.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441197", "wgs_master": "AUBK00000000.1", "refseq_category": "na", "taxid": "1120932", "species_taxid": "59505", "organism_name": "Actinotignum schaalii DSM 15541", "infraspecific_name": "strain=DSM 15541", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/15", "asm_name": "ASM42920v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000429205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/429/205/GCF_000429205.1_ASM42920v1", 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"sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.600 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2130987", "Number of Sequences": "27", "Longest Sequences (bp)": "403065", "N50 (bp)": "149273", "Gap Ratio (%)": "0.061427", "GCcontent (%)": "62.3", "Number of CDSs": "1770", "Average Protein Length": "349.5", "Coding Ratio (%)": "87.1", "Number of rRNAs": "2", "Number of tRNAs": "46", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinotignum schaalii", "strain": "strain=DSM 15541", "accession": "GCA_000429205.1", "taxid": 59505, "species_taxid": 59505, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 2128662.875, "gc_content": 61.867, "coding_genes": 1603.0, "rRNA16S_genes": 3.0, "tRNA_genes": 46.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Actinotignum", "schaalii", "DSM", "15541" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }