{
    "type": "genome",
    "identifier": "GCF_000429265.1",
    "organism": "Actinomyces gerencseriae DSM 6844",
    "title": "Actinomyces gerencseriae DSM 6844",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000429265.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441199",
        "wgs_master": "AUBN00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1120943",
        "species_taxid": "52769",
        "organism_name": "Actinomyces gerencseriae DSM 6844",
        "infraspecific_name": "strain=DSM 6844",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/09/05",
        "asm_name": "ASM42926v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000429265.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/429/265/GCF_000429265.1_ASM42926v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3420019",
        "genome_size_ungapped": "3418708",
        "gc_percent": "70.500000",
        "replicon_count": "0",
        "scaffold_count": "28",
        "contig_count": "31",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000429265.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "2854",
        "protein_coding_gene_count": "2741",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-09-05",
    "dateModified": "2013-09-05",
    "datePublished": "2013-09-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinomyces gerencseriae DSM 6844"
        ],
        "sample_taxid": [
            "1120943"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.922 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3420019",
        "Number of Sequences": "28",
        "Longest Sequences (bp)": "507851",
        "N50 (bp)": "303046",
        "Gap Ratio (%)": "0.038333",
        "GCcontent (%)": "70.7",
        "Number of CDSs": "2874",
        "Average Protein Length": "342.2",
        "Coding Ratio (%)": "86.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Actinomyces gerencseriae",
                "strain": "strain=DSM 6844",
                "accession": "GCA_000429265.1",
                "taxid": 52769,
                "species_taxid": 52769,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1127,
                "total_fragments": 1127,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Actinomyces israelii",
                "strain": "strain=DSM 43320",
                "accession": "GCA_000711965.1",
                "taxid": 1659,
                "species_taxid": 1659,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.477,
                "matched_fragments": 819,
                "total_fragments": 1127,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces massiliensis",
                "strain": "strain=4401292",
                "accession": "GCA_000269805.1",
                "taxid": 461393,
                "species_taxid": 461393,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.1132,
                "matched_fragments": 793,
                "total_fragments": 1127,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces dentalis",
                "strain": "strain=DSM 19115",
                "accession": "GCA_000429225.1",
                "taxid": 272548,
                "species_taxid": 272548,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0468,
                "matched_fragments": 641,
                "total_fragments": 1127,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces viscosus",
                "strain": "strain=NCTC10951",
                "accession": "GCA_900637975.1",
                "taxid": 1656,
                "species_taxid": 1656,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9249,
                "matched_fragments": 573,
                "total_fragments": 1127,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces viscosus",
                "strain": "strain=CCUG 14476",
                "accession": "GCA_004525795.1",
                "taxid": 1656,
                "species_taxid": 1656,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7754,
                "matched_fragments": 569,
                "total_fragments": 1127,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces radicidentis",
                "strain": "strain=CCUG 36733",
                "accession": "GCA_001553565.1",
                "taxid": 111015,
                "species_taxid": 111015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9324,
                "matched_fragments": 546,
                "total_fragments": 1127,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces haliotis",
                "strain": "strain=JCM 18848",
                "accession": "GCA_015355765.1",
                "taxid": 1280843,
                "species_taxid": 1280843,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8607,
                "matched_fragments": 494,
                "total_fragments": 1127,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces denticolens",
                "strain": "strain=DSM 20671",
                "accession": "GCA_002072185.1",
                "taxid": 52767,
                "species_taxid": 52767,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8238,
                "matched_fragments": 504,
                "total_fragments": 1127,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces marmotae",
                "strain": "strain=zg-325",
                "accession": "GCA_009829655.1",
                "taxid": 2737173,
                "species_taxid": 2737173,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6619,
                "matched_fragments": 426,
                "total_fragments": 1127,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces respiraculi",
                "strain": "strain=ZJ750",
                "accession": "GCA_014595995.2",
                "taxid": 2744574,
                "species_taxid": 2744574,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4786,
                "matched_fragments": 509,
                "total_fragments": 1127,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arsenicicoccus cauae",
                "strain": "strain=MKL-02",
                "accession": "GCA_009707125.1",
                "taxid": 2663847,
                "species_taxid": 2663847,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7436,
                "matched_fragments": 183,
                "total_fragments": 1127,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas palmilytica",
                "strain": "strain=EW123",
                "accession": "GCA_021590045.1",
                "taxid": 2608402,
                "species_taxid": 2608402,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3521,
                "matched_fragments": 219,
                "total_fragments": 1127,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinotalea solisilvae",
                "strain": "strain=KACC 19191",
                "accession": "GCA_016464425.1",
                "taxid": 2072922,
                "species_taxid": 2072922,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2008,
                "matched_fragments": 257,
                "total_fragments": 1127,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000429265.1",
                "gtdb_species": "s__Actinomyces gerencseriae",
                "ani": 100.0,
                "matched_fragments": 1127,
                "total_fragments": 1127,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.51",
                "min_intra_species_ani": "98.51",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_000711965.1",
                "gtdb_species": "s__Actinomyces israelii",
                "ani": 86.477,
                "matched_fragments": 819,
                "total_fragments": 1127,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.26",
                "min_intra_species_ani": "99.26",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000269805.1",
                "gtdb_species": "s__Actinomyces massiliensis",
                "ani": 85.1256,
                "matched_fragments": 790,
                "total_fragments": 1127,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.53",
                "min_intra_species_ani": "98.51",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000220835.1",
                "gtdb_species": "s__Actinomyces sp000220835",
                "ani": 83.4197,
                "matched_fragments": 704,
                "total_fragments": 1127,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.31",
                "min_intra_species_ani": "99.28",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000429225.1",
                "gtdb_species": "s__Actinomyces dentalis",
                "ani": 83.0604,
                "matched_fragments": 640,
                "total_fragments": 1127,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.22",
                "min_intra_species_ani": "98.22",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001278845.1",
                "gtdb_species": "s__Actinomyces sp001278845",
                "ani": 82.697,
                "matched_fragments": 631,
                "total_fragments": 1127,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011752065.1",
                "gtdb_species": "s__Actinomyces sp011752065",
                "ani": 81.8728,
                "matched_fragments": 579,
                "total_fragments": 1127,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001929375.1",
                "gtdb_species": "s__Actinomyces oris_B",
                "ani": 81.6681,
                "matched_fragments": 539,
                "total_fragments": 1127,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.22",
                "min_intra_species_ani": "97.84",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001553565.1",
                "gtdb_species": "s__Actinomyces radicidentis",
                "ani": 80.9354,
                "matched_fragments": 546,
                "total_fragments": 1127,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014595995.2",
                "gtdb_species": "s__Actinomyces sp011751985",
                "ani": 80.4202,
                "matched_fragments": 514,
                "total_fragments": 1127,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.79",
                "min_intra_species_ani": "99.58",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.165,
        "cell_length": 0.258,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.0,
        "genome_size": 3419363.5,
        "gc_content": 70.7,
        "coding_genes": 2308.7,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 49.8,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.95,
        "coccus_cell_shape": 0.05,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Actinomyces",
        "gerencseriae",
        "DSM",
        "6844"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}