{ "type": "genome", "identifier": "GCF_000429285.1", "organism": "Megalodesulfovibrio gigas DSM 1382 = ATCC 19364", "title": "Megalodesulfovibrio gigas DSM 1382 = ATCC 19364", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000429285.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440613", "wgs_master": "AUBO00000000.1", "refseq_category": "na", "taxid": "1121448", "species_taxid": "879", "organism_name": "Megalodesulfovibrio gigas DSM 1382 = ATCC 19364", "infraspecific_name": "strain=DSM 1382", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/15", "asm_name": "ASM42928v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000429285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/429/285/GCF_000429285.1_ASM42928v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3788225", "genome_size_ungapped": "3784678", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "84", "contig_count": "88", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-24", "total_gene_count": "3421", "protein_coding_gene_count": "3326", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-15", "dateModified": "2013-07-15", "datePublished": "2013-07-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Megalodesulfovibrio gigas DSM 1382 = ATCC 19364" ], "sample_taxid": [ "1121448" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "1.054 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3788225", "Number of Sequences": "84", "Longest Sequences (bp)": "212365", "N50 (bp)": "82722", "Gap Ratio (%)": "0.093632", "GCcontent (%)": "63.7", "Number of CDSs": "3314", "Average Protein Length": "336.3", "Coding Ratio (%)": "88.3", "Number of rRNAs": "12", "Number of tRNAs": "55", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Megalodesulfovibrio gigas", "strain": "strain=DSM 1382", "accession": "GCA_000429285.1", "taxid": 879, 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118, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fundidesulfovibrio putealis", "strain": "strain=DSM 16056", "accession": "GCA_000429325.1", "taxid": 270496, "species_taxid": 270496, "relation_to_type": "type", "validated": true, "ani": 77.2764, "matched_fragments": 236, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfohalovibrio reitneri", "strain": "strain=L21-Syr-AB", "accession": "GCA_000711295.1", "taxid": 1307759, "species_taxid": 1307759, "relation_to_type": "type", "validated": true, "ani": 77.274, "matched_fragments": 239, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupidesulfovibrio oxamicus", "strain": "strain=NCIMB 9442", "accession": "GCA_015731765.1", "taxid": 32016, "species_taxid": 32016, "relation_to_type": "type", "validated": true, "ani": 77.2664, "matched_fragments": 207, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio piger", "strain": "strain=ATCC 29098", "accession": "GCA_000156375.1", "taxid": 901, "species_taxid": 901, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0401, "matched_fragments": 147, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio porci", "strain": "strain=PG-178-WT-4", "accession": "GCA_009696265.1", "taxid": 2605782, "species_taxid": 2605782, "relation_to_type": "type", "validated": true, "ani": 76.8814, "matched_fragments": 147, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bilophila wadsworthia", "strain": "strain=ATCC 49260", "accession": "GCA_000701705.1", "taxid": 35833, "species_taxid": 35833, "relation_to_type": "type", "validated": true, "ani": 76.284, "matched_fragments": 85, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" } ], 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