{
    "type": "genome",
    "identifier": "GCF_000429425.1",
    "organism": "Algoriphagus mannitolivorans DSM 15301",
    "title": "Algoriphagus mannitolivorans DSM 15301",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000429425.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441202",
        "wgs_master": "AUBV00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1120965",
        "species_taxid": "226504",
        "organism_name": "Algoriphagus mannitolivorans DSM 15301",
        "infraspecific_name": "strain=DSM 15301",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/15",
        "asm_name": "ASM42942v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000429425.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/429/425/GCF_000429425.1_ASM42942v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4152949",
        "genome_size_ungapped": "4152414",
        "gc_percent": "42.500000",
        "replicon_count": "0",
        "scaffold_count": "22",
        "contig_count": "24",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000429425.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "3640",
        "protein_coding_gene_count": "3578",
        "non_coding_gene_count": "49",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-15",
    "dateModified": "2013-07-15",
    "datePublished": "2013-07-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Algoriphagus mannitolivorans DSM 15301"
        ],
        "sample_taxid": [
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        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
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        "sample_host_location_id": [],
        "data_size": "1.176 MB",
        "sample_ph_range": {
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            "max": 611.0
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        "sample_temperature_range": {
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            "max": null
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        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
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        "Number of Sequences": "22",
        "Longest Sequences (bp)": "529353",
        "N50 (bp)": "334964",
        "Gap Ratio (%)": "0.012882",
        "GCcontent (%)": "42.7",
        "Number of CDSs": "3559",
        "Average Protein Length": "350.1",
        "Coding Ratio (%)": "90.0",
        "Number of rRNAs": "4",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_af": "0.93",
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            {
                "accession": "GCA_013373065.1",
                "gtdb_species": "s__Algoriphagus sp013373065",
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                "total_fragments": 1373,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
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        "growth_tmp": 37.0,
        "optimum_tmp": 37.5,
        "optimum_ph": 7.0,
        "genome_size": 4152681.5,
        "gc_content": 42.7,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_genome_taxon": [
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        "mannitolivorans",
        "DSM",
        "15301"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}