{ "type": "genome", "identifier": "GCF_000429445.1", "organism": "Algoriphagus terrigena DSM 22685", "title": "Algoriphagus terrigena DSM 22685", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000429445.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440865", "wgs_master": "AUBW00000000.1", "refseq_category": "reference genome", "taxid": "1120967", "species_taxid": "344884", "organism_name": "Algoriphagus terrigena DSM 22685", "infraspecific_name": "strain=DSM 22685", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/15", "asm_name": "ASM42944v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000429445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/429/445/GCF_000429445.1_ASM42944v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5783376", "genome_size_ungapped": "5781215", "gc_percent": "48.000000", "replicon_count": "0", "scaffold_count": "58", "contig_count": "60", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000429445.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "4888", "protein_coding_gene_count": "4823", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-15", "dateModified": "2013-07-15", "datePublished": "2013-07-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Algoriphagus terrigena DSM 22685" ], "sample_taxid": [ "1120967" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.651 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5783376", "Number of Sequences": "58", "Longest Sequences (bp)": "581997", "N50 (bp)": "212985", "Gap Ratio (%)": "0.037366", "GCcontent (%)": "47.8", "Number of CDSs": "4760", "Average Protein Length": "350.6", "Coding Ratio (%)": "86.6", "Number of rRNAs": "3", "Number of tRNAs": "40", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Algoriphagus terrigena", "strain": "strain=DSM 22685", "accession": "GCA_000429445.1", "taxid": 344884, "species_taxid": 344884, 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