{ "type": "genome", "identifier": "GCF_000429545.1", "organism": "Arenibacter certesii DSM 19833", "title": "Arenibacter certesii DSM 19833", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000429545.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440866", "wgs_master": "AUCB00000000.1", "refseq_category": "reference genome", "taxid": "1121011", "species_taxid": "228955", "organism_name": "Arenibacter certesii DSM 19833", "infraspecific_name": "strain=DSM 19833", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/15", "asm_name": "ASM42954v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000429545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/429/545/GCF_000429545.1_ASM42954v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4989751", "genome_size_ungapped": "4983006", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "83", "contig_count": "87", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000429545.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4096", "protein_coding_gene_count": "3995", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-15", "dateModified": "2013-07-15", "datePublished": "2013-07-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Arenibacter certesii DSM 19833" ], "sample_taxid": [ "1121011" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.417 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4989751", "Number of Sequences": "83", "Longest Sequences (bp)": "400031", "N50 (bp)": "123453", "Gap Ratio (%)": "0.135177", "GCcontent (%)": "37.7", "Number of CDSs": "3903", "Average Protein Length": "355.6", "Coding Ratio (%)": "83.4", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arenibacter certesii", "strain": "strain=DSM 19833", "accession": "GCA_000429545.1", "taxid": 228955, "species_taxid": 228955, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1619, "total_fragments": 1622, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Arenibacter certesii", "strain": "strain=KCTC 12113", "accession": "GCA_014651295.1", "taxid": 228955, "species_taxid": 228955, "relation_to_type": "type", "validated": true, "ani": 99.9797, "matched_fragments": 1582, "total_fragments": 1622, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Arenibacter latericius", "strain": "strain=DSM 15913", "accession": "GCA_000424985.1", "taxid": 86104, "species_taxid": 86104, "relation_to_type": "type", "validated": true, "ani": 85.6404, "matched_fragments": 1169, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter catalasegens", "strain": "strain=P308H10", "accession": "GCA_002909235.1", "taxid": 2056779, "species_taxid": 2056779, "relation_to_type": "type", "validated": true, "ani": 77.9352, "matched_fragments": 363, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter hampyeongensis", "strain": "strain=JCM 17788", "accession": "GCA_002909255.1", "taxid": 1028743, "species_taxid": 1028743, "relation_to_type": "type", "validated": true, "ani": 77.924, "matched_fragments": 334, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter algicola", "strain": "strain=TG409", "accession": "GCA_000733925.1", "taxid": 616991, "species_taxid": 616991, "relation_to_type": "type", "validated": true, "ani": 77.8759, "matched_fragments": 313, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter echinorum", "strain": "strain=DSM 23522", "accession": "GCA_003259375.1", "taxid": 440515, "species_taxid": 440515, "relation_to_type": "type", "validated": true, "ani": 77.8498, "matched_fragments": 315, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter aquaticus", "strain": "strain=GUO", "accession": "GCA_003957295.1", "taxid": 2489054, "species_taxid": 2489054, "relation_to_type": "type", "validated": true, "ani": 77.844, "matched_fragments": 297, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter troitsensis", "strain": "strain=DSM 19835", "accession": "GCA_900177645.1", "taxid": 188872, "species_taxid": 188872, "relation_to_type": "type", "validated": true, "ani": 77.7923, "matched_fragments": 314, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter arenosicollis", "strain": "strain=BSSL-BM3", "accession": "GCA_014397245.1", "taxid": 2762274, "species_taxid": 2762274, "relation_to_type": "type", "validated": true, "ani": 77.5953, "matched_fragments": 345, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia barbeyronii", "strain": "strain=KMM 6746", "accession": "GCA_018603515.1", "taxid": 2748009, "species_taxid": 2748009, "relation_to_type": "type", "validated": true, "ani": 76.5021, "matched_fragments": 125, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter dokdonensis", "strain": "strain=DSW-8", "accession": "GCA_001447995.1", "taxid": 320912, "species_taxid": 320912, "relation_to_type": "type", "validated": true, "ani": 76.3414, "matched_fragments": 129, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 76.0423, "matched_fragments": 52, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagihabitans pacificus", "strain": "strain=TP-CH-4", "accession": "GCA_009371985.2", "taxid": 2696054, "species_taxid": 2696054, 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Arenibacter", "certesii", "DSM", "19833" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }