{ "type": "genome", "identifier": "GCF_000429785.1", "organism": "Chitinibacter tainanensis DSM 15459", "title": "Chitinibacter tainanensis DSM 15459", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000429785.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441549", "wgs_master": "AUCN00000000.1", "refseq_category": "reference genome", "taxid": "1121274", "species_taxid": "230667", "organism_name": "Chitinibacter tainanensis DSM 15459", "infraspecific_name": "strain=DSM 15459", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/09/05", "asm_name": "ASM42978v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000429785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/429/785/GCF_000429785.1_ASM42978v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3425989", "genome_size_ungapped": "3424644", "gc_percent": "56.000000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000429785.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3247", "protein_coding_gene_count": "3168", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-09-05", "dateModified": "2013-09-05", "datePublished": "2013-09-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Chitinibacter tainanensis DSM 15459" ], "sample_taxid": [ "1121274" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "0.964 MB", "sample_ph_range": { "min": 5590.0, "max": 5590.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3425989", "Number of Sequences": "17", "Longest Sequences (bp)": "745260", "N50 (bp)": "476700", "Gap Ratio (%)": "0.039259", "GCcontent (%)": "56.1", "Number of CDSs": "3180", "Average Protein Length": "320.2", "Coding Ratio (%)": "89.2", "Number of rRNAs": "6", "Number of tRNAs": "55", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chitinibacter tainanensis", "strain": "strain=DSM 15459", "accession": "GCA_000429785.1", "taxid": 230667, "species_taxid": 230667, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1131, "total_fragments": 1133, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chitinibacter fontanus", "strain": "strain=STM-7", "accession": "GCA_013423785.1", "taxid": 1737446, "species_taxid": 1737446, "relation_to_type": "type", "validated": true, "ani": 80.3908, "matched_fragments": 506, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinibacter bivalviorum", "strain": "strain=2T18", "accession": "GCA_013403565.1", "taxid": 2739434, "species_taxid": 2739434, "relation_to_type": "type", "validated": true, "ani": 79.4086, "matched_fragments": 470, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deefgea chitinilytica", "strain": "strain=LMG 24817", "accession": "GCA_016881405.1", "taxid": 570276, "species_taxid": 570276, "relation_to_type": "type", "validated": true, "ani": 78.1083, "matched_fragments": 268, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deefgea rivuli", "strain": "strain=DSM 18356", "accession": "GCA_000620145.1", "taxid": 400948, "species_taxid": 400948, "relation_to_type": "type", "validated": true, "ani": 77.5977, "matched_fragments": 295, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deefgea salmonis", "strain": "strain=H3-26", "accession": "GCA_020531905.1", "taxid": 2875502, "species_taxid": 2875502, "relation_to_type": "type", "validated": true, "ani": 77.53, "matched_fragments": 239, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinilyticum piscinae", "strain": "strain=4Y14", "accession": "GCA_015223195.1", "taxid": 2866724, "species_taxid": 2866724, "relation_to_type": "type", "validated": true, "ani": 77.1851, "matched_fragments": 240, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinilyticum litopenaei", "strain": "strain=DSM 21440", "accession": "GCA_000428145.1", "taxid": 1121276, "species_taxid": 1121276, "relation_to_type": "type", "validated": true, "ani": 76.9818, "matched_fragments": 254, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvimonas iriomotensis", "strain": "strain=CGMCC 1.8859", "accession": "GCA_014645535.1", "taxid": 449662, "species_taxid": 449662, "relation_to_type": "type", "validated": true, "ani": 76.8079, "matched_fragments": 180, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Iodobacter ciconiae", "strain": "strain=H11R3", "accession": "GCA_003952345.1", "taxid": 2496266, "species_taxid": 2496266, "relation_to_type": "type", "validated": true, "ani": 76.8037, "matched_fragments": 136, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvimonas terrae", "strain": "strain=DSM 18233", "accession": "GCA_014202765.1", "taxid": 300266, "species_taxid": 300266, "relation_to_type": "type", "validated": true, "ani": 76.785, "matched_fragments": 165, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jeongeupia naejangsanensis", "strain": "strain=DSM 24253", "accession": "GCA_016865585.1", "taxid": 613195, "species_taxid": 613195, "relation_to_type": "type", "validated": true, "ani": 76.7683, "matched_fragments": 146, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Andreprevotia chitinilytica", "strain": "strain=DSM 18519", "accession": "GCA_000711875.1", "taxid": 396808, "species_taxid": 396808, "relation_to_type": "type", "validated": true, "ani": 76.6804, "matched_fragments": 188, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rivicola pingtungensis", "strain": "strain=DSM 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