{ "type": "genome", "identifier": "GCF_000429865.1", "organism": "Cucumibacter marinus DSM 18995", "title": "Cucumibacter marinus DSM 18995", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000429865.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441550", "wgs_master": "AUCR00000000.1", "refseq_category": "reference genome", "taxid": "422296", "species_taxid": "1121252", "organism_name": "Cucumibacter marinus DSM 18995", "infraspecific_name": "strain=DSM 18995", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/15", "asm_name": "ASM42986v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000429865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/429/865/GCF_000429865.1_ASM42986v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3713661", "genome_size_ungapped": "3711803", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000429865.1-RS_2024_12_01", "annotation_date": "2024-12-01", "total_gene_count": "3601", "protein_coding_gene_count": "3533", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-15", "dateModified": "2013-07-15", "datePublished": "2013-07-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Cucumibacter marinus DSM 18995" ], "sample_taxid": [ "422296" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.035 MB", "sample_ph_range": { "min": 69.0, "max": 69.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3713661", "Number of Sequences": "22", "Longest Sequences (bp)": "612378", "N50 (bp)": "437622", "Gap Ratio (%)": "0.050031", "GCcontent (%)": "62.2", "Number of CDSs": "3565", "Average Protein Length": "309.1", "Coding Ratio (%)": "89.0", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cucumibacter marinus", "strain": "strain=DSM 18995", "accession": "GCA_000429865.1", "taxid": 1121252, "species_taxid": 1121252, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1223, 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"Pelagibacterium luteolum", "strain": "strain=CGMCC 1.10267", "accession": "GCA_900100665.1", "taxid": 440168, "species_taxid": 440168, "relation_to_type": "type", "validated": true, "ani": 77.3587, "matched_fragments": 189, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagibacterium halotolerans", "strain": "strain=B2", "accession": "GCA_000230555.1", "taxid": 531813, "species_taxid": 531813, "relation_to_type": "type", "validated": true, "ani": 77.3394, "matched_fragments": 237, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia aurantiaca", "strain": "strain=H239", "accession": "GCA_011058215.1", "taxid": 2714858, "species_taxid": 2714858, "relation_to_type": "type", "validated": true, "ani": 77.2636, "matched_fragments": 188, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stappia albiluteola", "strain": "strain=F7233", "accession": "GCA_014050225.1", "taxid": 2758565, "species_taxid": 2758565, "relation_to_type": "type", "validated": true, "ani": 77.1885, "matched_fragments": 151, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Starkeya koreensis", "strain": "strain=Jip08", "accession": "GCA_023016525.1", "taxid": 266121, "species_taxid": 266121, "relation_to_type": "type", "validated": true, "ani": 76.9612, "matched_fragments": 160, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia insulae", "strain": "strain=DS-56", "accession": "GCA_000970465.2", "taxid": 408174, "species_taxid": 408174, "relation_to_type": "type", "validated": true, "ani": 76.9483, "matched_fragments": 254, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagibacterium lentulum", "strain": "strain=B2", "accession": "GCA_003992625.1", "taxid": 2029865, "species_taxid": 2029865, 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76.8204, "matched_fragments": 137, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagibacterium lentulum", "strain": "strain=CGMCC 1.15896", "accession": "GCA_014643755.1", "taxid": 2029865, "species_taxid": 2029865, "relation_to_type": "type", "validated": true, "ani": 76.7889, "matched_fragments": 149, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia hirudinis", "strain": "strain=DSM 25966", "accession": "GCA_014196455.1", "taxid": 1293440, "species_taxid": 1293440, "relation_to_type": "type", "validated": true, "ani": 76.7273, "matched_fragments": 162, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdaerophilum calidifontis", "strain": "strain=SYSU G02060", "accession": "GCA_008641065.1", "taxid": 2604328, "species_taxid": 2604328, "relation_to_type": "type", "validated": true, "ani": 76.6413, "matched_fragments": 142, 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