{
    "type": "genome",
    "identifier": "GCF_000429925.1",
    "organism": "Desulfatirhabdium butyrativorans DSM 18734",
    "title": "Desulfatirhabdium butyrativorans DSM 18734",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000429925.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02440872",
        "wgs_master": "AUCU00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1121394",
        "species_taxid": "340467",
        "organism_name": "Desulfatirhabdium butyrativorans DSM 18734",
        "infraspecific_name": "strain=DSM 18734",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/15",
        "asm_name": "ASM42992v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000429925.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/429/925/GCF_000429925.1_ASM42992v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4481975",
        "genome_size_ungapped": "4475754",
        "gc_percent": "55.000000",
        "replicon_count": "0",
        "scaffold_count": "73",
        "contig_count": "83",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000429925.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "3902",
        "protein_coding_gene_count": "3805",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-15",
    "dateModified": "2013-07-15",
    "datePublished": "2013-07-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Desulfatirhabdium butyrativorans DSM 18734"
        ],
        "sample_taxid": [
            "1121394"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Netherlands"
        ],
        "sample_host_location_id": [],
        "data_size": "1.265 MB",
        "sample_ph_range": {
            "min": 6580.0,
            "max": 6580.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 97.4,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4481975",
        "Number of Sequences": "73",
        "Longest Sequences (bp)": "446128",
        "N50 (bp)": "137974",
        "Gap Ratio (%)": "0.138800",
        "GCcontent (%)": "54.9",
        "Number of CDSs": "3926",
        "Average Protein Length": "327.5",
        "Coding Ratio (%)": "86.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Desulfatirhabdium butyrativorans",
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                "species_taxid": 340467,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1454,
                "total_fragments": 1456,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Desulfosarcina ovata subsp. sediminis",
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                "accession": "GCA_009688985.1",
                "taxid": 885957,
                "species_taxid": 83564,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfatitalea tepidiphila",
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                "taxid": 1185843,
                "species_taxid": 1185843,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.033,
                "matched_fragments": 78,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfonema ishimotonii",
                "strain": "strain=Tokyo 01",
                "accession": "GCA_003851005.1",
                "taxid": 45657,
                "species_taxid": 45657,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7409,
                "matched_fragments": 69,
                "total_fragments": 1456,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 97.4,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_000429925.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfatirhabdiaceae;g__Desulfatirhabdium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903909505.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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                "mean_intra_species_ani": "99.66",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903839535.1",
                "gtdb_species": "s__RAAP-1 sp903839535",
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            },
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.031,
        "cell_length": 0.451,
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        "growth_tmp": 28.0,
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        "gram_stain": 0.0,
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        "aerobic_respiration": 0.0,
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        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
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        "butyrativorans",
        "DSM",
        "18734"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}